Mp2g26680



Description

Annotation

Database ID Description
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
Gene3D G3DSA:3.40.50.300 -
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd20404 Tudor_Agenet_AtEML-like
Pfam PF00271 Helicase conserved C-terminal domain
SUPERFAMILY SSF54160 Chromo domain-like
Gene3D G3DSA:2.40.50.40 -
SMART SM00384 AT_hook_2
Pfam PF00176 SNF2-related domain
Pfam PF21743 PTM/DIR17-like, Tudor domain
SMART SM00298 chromo_7
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
SMART SM00490 helicmild6
SMART SM00487 ultradead3
SMART SM00249 PHD_3
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:3.40.50.10810 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SUPERFAMILY SSF63748 Tudor/PWWP/MBT
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
SMART SM00333 TUDOR_7
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:2.30.30.140 -
Gene3D G3DSA:2.30.30.1150 -
PRINTS PR00929 AT-hook-like domain signature
KOG KOG0385 Chromatin remodeling complex WSTF-ISWI, small subunit; C-term missing; [K]
KOG KOG1244 Predicted transcription factor Requiem/NEURO-D4; N-term missing; [K]
KOG KOG4462 WASP-interacting protein VRP1/WIP, contains WH2 domain; [Z]
KOG KOG2748 Uncharacterized conserved protein, contains chromo domain; C-term missing; [B]
MapolyID Mapoly0025s0016 -
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.12 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g26680.1 chr2:32821862..32838206 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.