Mp3g14360



Description

Annotation

Database ID Description
Pfam PF13426 PAS domain
Pfam PF07646 Kelch motif
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF81383 F-box domain
SUPERFAMILY SSF117281 Kelch motif
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
CDD cd00130 PAS
FunFam G3DSA:2.120.10.80:FF:000005 Putative LOV domain-containing protein
FunFam G3DSA:3.30.450.20:FF:000041 Adagio protein 1
Gene3D G3DSA:1.20.1280.50 -
Pfam PF13418 Galactose oxidase, central domain
NCBIfam TIGR00229 PAS domain S-box protein
Gene3D G3DSA:3.30.450.20 PAS domain
PANTHER PTHR46175 BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR
Gene3D G3DSA:2.120.10.80 -
ProSiteProfiles PS50112 PAS repeat profile.
Pfam PF12937 F-box-like
KOG KOG0379 Kelch repeat-containing proteins; N-term missing; C-term missing; [R]
KOG KOG0379 Kelch repeat-containing proteins; C-term missing; [R]
KOG KOG1229 3'5'-cyclic nucleotide phosphodiesterases; C-term missing; [T]
KOG KOG2997 F-box protein FBX9; N-term missing; C-term missing; [R]
MapolyID Mapoly0004s0235 -
GO GO:0009637 response to blue light
GO GO:0005634 nucleus
GO GO:0005515 protein binding
GO GO:0019005 SCF ubiquitin ligase complex
GO GO:0007623 circadian rhythm
GO GO:0005829 cytosol

Nomenclature

Gene symbol Product Transcript ID Status
MpFKF Orthologue of FKF1/ZTL/LKP2 in Arabidopsis Published

Associated Literature (AI-based literature mining, Beta-version)

Orthologue of FKF1/ZTL/LKP2 in Arabidopsis; Knockout of MpFKF completely abolishes the long-day-dependent growth-phase transition in M. polymorpha. Overexpression of MpFKF promotes growth-phase transition under short-day conditions. (from nomenclature)

2 core 4 peripheral

Linde, A.-M., et al. (2017) · New Phytologist  research experimental subject
Sole ZTL/FKF1-family member; did not show significant circadian rhythmicity. Interacts with MpGI in the photoperiodic pathway.
Kubota A, Kita S, Ishizaki K, Nishihama R, Yamato KT, Kohchi T. (2014) · Nat Commun  research experimental subject
FLAVIN-BINDING KELCH REPEAT F-BOX1 (FKF1) ortholog forming a complex with MpGI; knockout abolished and overexpression promoted the photoperiodic growth-phase transition, indicating the GI-FKF1 module predates land-plant divergence.
Kanesaka, Y., et al. (2023) · Frontiers in Plant Science  research citation background
Cited from prior work: knockout suppressed and overexpression promoted the growth-phase transition irrespective of daylength.
Zhang, L., et al. (2022b) · International Journal of Molecular Sciences  research citation background
ZEITLUPE-family blue-light receptor cited as background in the M. polymorpha photoreceptor repertoire.
Li, T., et al. (2021b) · Cells  research citation comparator
Blue-light receptor cited among characterized M. polymorpha photoreceptors.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g14360.1 chr3:14802254..14807396 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g14360.2 chr3:14802254..14807396 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g14360 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g14360 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.