Mp3g15030



Description

Annotation

Database ID Description
Pfam PF09111 SLIDE
SUPERFAMILY SSF46689 Homeodomain-like
CDD cd00167 SANT
SMART SM00490 helicmild6
Gene3D G3DSA:3.40.50.300 -
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51293 SANT domain profile.
FunFam G3DSA:3.40.50.300:FF:000519 ISWI chromatin-remodeling complex ATPase CHR11
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
FunFam G3DSA:1.10.10.60:FF:000022 ISWI chromatin-remodeling complex ATPase CHR11 isoform A
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.10.10.60:FF:000155 ISWI chromatin-remodeling complex ATPase CHR11
Coils Coil Coil
CDD cd18793 SF2_C_SNF
FunFam G3DSA:3.40.50.10810:FF:000028 Chromatin-remodeling complex ATPase
Gene3D G3DSA:1.10.10.60 -
Gene3D G3DSA:1.20.5.1190 iswi atpase
Gene3D G3DSA:1.10.1040.30 ISWI, HAND domain
Pfam PF09110 HAND
SMART SM00487 ultradead3
CDD cd17997 DEXHc_SMARCA1_SMARCA5
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.10810 -
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
SUPERFAMILY SSF101224 HAND domain of the nucleosome remodeling ATPase ISWI
SMART SM00717 sant
KEGG K11654 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
KOG KOG0385 Chromatin remodeling complex WSTF-ISWI, small subunit; [K]
MapolyID Mapoly0004s0169 -
GO GO:0034728 nucleosome organization
GO GO:0005634 nucleus
GO GO:0031491 nucleosome binding
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB1 transcription factor, MYB Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g15030.1 chr3:15406829..15420758 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.