Mp4g02060



Description

Annotation

Database ID Description
Pfam PF00628 PHD-finger
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
FunFam G3DSA:3.30.40.10:FF:000650 Homeobox protein HAT3.1
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
PANTHER PTHR12628 POLYCOMB-LIKE TRANSCRIPTION FACTOR
ProSiteProfiles PS50071 'Homeobox' domain profile.
Pfam PF00046 Homeodomain
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
CDD cd00086 homeodomain
CDD cd15504 PHD_PRHA_like
SMART SM00389 HOX_1
SMART SM00249 PHD_3
SUPERFAMILY SSF46689 Homeodomain-like
KOG KOG4299 PHD Zn-finger protein; C-term missing; [R]
KOG KOG0774 Transcription factor PBX and related HOX domain proteins; N-term missing; C-term missing; [K]
MapolyID Mapoly0080s0093 -
GO GO:0005634 nucleus
GO GO:0006325 chromatin organization
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHD15 transcription factor, HD, homeodomain protein Published
MpPHD transcription factor, HD, homeodomain protein Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g02060.1 chr4:2682131..2702499 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g02060.2 chr4:2682207..2699818 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.