Mp4g02260



Description

Annotation

Database ID Description
Gene3D G3DSA:3.40.50.300 -
SMART SM00487 ultradead3
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMART SM00490 helicmild6
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SUPERFAMILY SSF90229 CCCH zinc finger
PANTHER PTHR18934 ATP-DEPENDENT RNA HELICASE
Gene3D G3DSA:1.20.120.1080 -
Pfam PF14608 RNA-binding, Nab2-type zinc finger
SMART SM00356 c3hfinal6
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
CDD cd18791 SF2_C_RHA
Pfam PF00270 DEAD/DEAH box helicase
Pfam PF10354 rRNA (uridine-N3-)-methyltransferase BTM5-like
CDD cd17917 DEXHc_RHA-like
Gene3D G3DSA:4.10.1000.10 -
KOG KOG0920 ATP-dependent RNA helicase A; C-term missing; [A]
KOG KOG1040 Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit); C-term missing; [A]
KOG KOG4174 Uncharacterized conserved protein; N-term missing; [S]
MapolyID Mapoly0080s0073 -
GO GO:0005622 intracellular anatomical structure
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0005524 ATP binding
GO GO:0070042 rRNA (uridine-N3-)-methyltransferase activity
GO GO:0070475 rRNA base methylation
GO GO:0004386 helicase activity
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H15 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g02260.1 chr4:2852205..2861891 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.