Mp4g12200



Description

Annotation

Database ID Description
SMART SM00487 ultradead3
PANTHER PTHR10799 SNF2/RAD54 HELICASE FAMILY
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00490 helicmild6
Coils Coil Coil
Gene3D G3DSA:3.40.50.300 -
Pfam PF00271 Helicase conserved C-terminal domain
CDD cd18793 SF2_C_SNF
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.10810 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
FunFam G3DSA:3.40.50.10810:FF:000030 ATP-dependent DNA helicase DDM1
KEGG K19001 ATP-dependent DNA helicase
KOG KOG0385 Chromatin remodeling complex WSTF-ISWI, small subunit; C-term missing; [K]
MapolyID Mapoly0011s0202 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0003677 DNA binding
GO GO:0044030 obsolete regulation of DNA methylation

Nomenclature

Gene symbol Product Transcript ID Status
MpDDM1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g12200.1 chr4:15288371..15296370 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.