Mp4g12650



Description

Annotation

Database ID Description
SMART SM01136 DKCLD_2
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain
CDD cd02572 PseudoU_synth_hDyskerin
NCBIfam TIGR00451 uncharacterized domain 2
SMART SM00359 pua_5
Coils Coil Coil
Gene3D G3DSA:2.30.130.10 PUA domain
Pfam PF01472 PUA domain
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase
PANTHER PTHR23127 CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5
NCBIfam TIGR00425 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5
CDD cd21148 PUA_Cbf5
Pfam PF08068 DKCLD (NUC011) domain
SUPERFAMILY SSF88697 PUA domain-like
FunFam G3DSA:3.30.2350.10:FF:000001 H/ACA ribonucleoprotein complex subunit CBF5
Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain)
ProSiteProfiles PS50890 PUA domain profile.
SUPERFAMILY SSF55120 Pseudouridine synthase
KEGG K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
KOG KOG2529 Pseudouridine synthase; [J]
MapolyID Mapoly0138s0004 -
GO GO:0000495 box H/ACA sno(s)RNA 3'-end processing
GO GO:0031429 box H/ACA snoRNP complex
GO GO:0003723 RNA binding
GO GO:0031118 rRNA pseudouridine synthesis
GO GO:0001522 pseudouridine synthesis
GO GO:0006396 RNA processing
GO GO:1990481 mRNA pseudouridine synthesis
GO GO:0009451 RNA modification
GO GO:0009982 pseudouridine synthase activity
GO GO:0031120 snRNA pseudouridine synthesis

Nomenclature

Gene symbol Product Transcript ID Status
MpCBF5 transcription factor, CBF5 Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g12650.1 chr4:16150778..16153264 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.