Mp4g13430
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF47113 | Histone-fold |
| PANTHER | PTHR10484 | HISTONE H4 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A |
| FunFam | G3DSA:1.10.20.10:FF:000002 | Histone H4 |
| Pfam | PF15511 | Centromere kinetochore component CENP-T histone fold |
| CDD | cd00076 | H4 |
| PRINTS | PR00623 | Histone H4 signature |
| ProSitePatterns | PS00047 | Histone H4 signature. |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| SMART | SM00417 | h44 |
| KEGG | K11254 | histone H4 |
| KOG | KOG3467 | Histone H4; [B] |
| MapolyID | Mapoly0214s0009 | - |
| GO | GO:0006334 | nucleosome assembly |
| GO | GO:0030527 | structural constituent of chromatin |
| GO | GO:0003677 | DNA binding |
| GO | GO:0000786 | nucleosome |
| GO | GO:0046982 | protein heterodimerization activity |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpH4c | Chromatin related protein | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Marchantia Histone H4 homologue (MpHistone4 / MpH4), isolated here as a cell-division marker; used as an antisense in-situ probe to validate the whole-mount in situ hybridization method. Its signal marked dividing cells around the meristematic zones and gemma margins. Used as a tool/marker, not the subject of study.
0 core 2 peripheral
Althoff F, Kopischke S, Zobell O, Ide K, Ishizaki K, Kohchi T, Zachgo S. (2014)
· Transgenic Res research experimental tool
Marchantia Histone H4 homologue (MpHistone4 / MpH4), isolated here as a cell-division marker; used as an antisense in-situ probe to validate the whole-mount in situ hybridization method. Its signal marked dividing cells around the meristematic zones and gemma margins. Used as a tool/marker, not the subject of study.
Busch, A., et al. (2019)
· New Phytologist research experimental tool
Histone H4 (Mapoly0214s0009); cell-proliferation marker.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g13430 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g13430.1 GCCACGGAGC TAATCACAAT TAACACGTCA TTGAGGAAGC TCGAGATTCG GTCGAGTATA GATGCTGTGC GCCGCTCGTC AGCGCTCACA TTTGCGATTC GAATTCTGCT GCCACACTTG CGCTCGAAGC TCTCAACTGT CTCTGTTCGA AGTGCGCAGC CATGTCTGGA CGCGGCAAGG GAGGTAAGGG TTTGGGCAAA GGAGGCGCCA AGCGTCATAG GAAGGTGTTC AGAGATAACA TCCAGGGAAT CACCAAGCCC GCCATCAGGC GTCTGGCCCG ACGAGGAGGA GTGAAGCGTA TCAGCGGGCT GATTTACGAG GAGACTCGCG GAGTTCTGAA GATCTTTCTG GAGAATGTGA TCCGAGATGC GGTGACGTAC ACGGAGCACG CGAGGCGCAA GACTGTGACT GCTATGGACG TGGTGTACGC GCTGAAGAGG CAGGGAAGAA CTCTGTACGG GTTCGGGGGG TAGAATGTGC TCTGCCGTGC CCATTGGTTT GATAGTCTTT GCTGTGACGG GTGCACAATT TTCCACGGTC TGGATTTTTT GAGTGCTATT TTTGTTTCTA GGCAGAGTGA GGTTCATTTT CTGCTCGTGG AAAGGTACAT CCGTGCACTT TGTATCCCGT CTGCGAATAG TTCGATTCGA CAATTCGTCG AGTTATATAA GCCAGGCCTT TCGGGCGTAG TCGGGAGATA TCAATTGTAA ATATAAACGT AGCTCGAGAT TAATCCCGCC GAACATTTTT TTGGGGTTTG ATCCCAGTAT GTACATTACA CTTCAGATTT AAGTTTTGAA AGTCTCGTTC CATTTGAACA GGACTTCAAG AAGCCTCTAT TCAGTACTTT CCCGGTCTTC CTGTCATGGT GCATCACCTC AGTAGATTGA GAAACTTGAT GTAGGTTGAA TGATTACTGT TCGACAGAAT CTACGATATC TTGTAAGTGG TACTCCACAA GATAAGAAAG CCTGTCAGTG TATTCGAACG TTATGAGGAG CTCTCACTTT CTCCCTTTCT CCCTCAGTTA ACAAGGGAGG TCCTCATTAA GTTGGAACAC ATTGACAGGC TTTCTTATCG AATCATTCGA ATTCAATGAC ATCATCTTCA CTTTTTCCCT GCTTCTCTGC TGCGCTTAAC AATTGCAGCA ACTGGCGTAT CCAAAGAGTG AATTAATCGA CATTTGCTGC AACAGTTGAG TATAATCAAC ATATTTGGGA CACTCGAAAA TTCTGTTATA TTGTCGCAGA TTTAACTCAG GTCCTTCAGC CTAGCCGATT CAATCAGGAA TTGACATCTA AAATCATTTG CTCCGCACAT CTTGAAAATG GAAAAATGAT ATAGATGATA AAGCACTCAA CAAATCAACA TTGTATATAC ACAAATACCT TTGCGAGTAA GCAAACCTCG GCCACCGAAG GCCAACACTA AGTACTGTAC GTAAGTTTCA TCACGAGCAA ACTCTGAATG TCAAGAATCT TGAAAACACT ATTGCTCCGT AAATCATTTA CACTCACCAC TTCAATAGGA |
mRNA UTR + CDS |
| >Mp4g13430.1 GCCACGGAGC TAATCACAAT TAACACGTCA TTGAGGAAGC TCGAGATTCG GTCGAGTATA GATGCTGTGC GCCGCTCGTC AGCGCTCACA TTTGCGATTC GAATTCTGCT GCCACACTTG CGCTCGAAGC TCTCAACTGT CTCTGTTCGA AGTGCGCAGC CATGTCTGGA CGCGGCAAGG GAGGTAAGGG TTTGGGCAAA GGAGGCGCCA AGCGTCATAG GAAGGTGTTC AGAGATAACA TCCAGGGAAT CACCAAGCCC GCCATCAGGC GTCTGGCCCG ACGAGGAGGA GTGAAGCGTA TCAGCGGGCT GATTTACGAG GAGACTCGCG GAGTTCTGAA GATCTTTCTG GAGAATGTGA TCCGAGATGC GGTGACGTAC ACGGAGCACG CGAGGCGCAA GACTGTGACT GCTATGGACG TGGTGTACGC GCTGAAGAGG CAGGGAAGAA CTCTGTACGG GTTCGGGGGG TAGAATGTGC TCTGCCGTGC CCATTGGTTT GATAGTCTTT GCTGTGACGG GTGCACAATT TTCCACGGTC TGGATTTTTT GAGTGCTATT TTTGTTTCTA GGCAGAGTGA GGTTCATTTT CTGCTCGTGG AAAGGTACAT CCGTGCACTT TGTATCCCGT CTGCGAATAG TTCGATTCGA CAATTCGTCG AGTTATATAA GCCAGGCCTT TCGGGCGTAG TCGGGAGATA TCAATTGTAA ATATAAACGT AGCTCGAGAT TAATCCCGCC GAACATTTTT TTGGGGTTTG ATCCCAGTAT GTACATTACA CTTCAGATTT AAGTTTTGAA AGTCTCGTTC CATTTGAACA GGACTTCAAG AAGCCTCTAT TCAGTACTTT CCCGGTCTTC CTGTCATGGT GCATCACCTC AGTAGATTGA GAAACTTGAT GTAGGTTGAA TGATTACTGT TCGACAGAAT CTACGATATC TTGTAAGTGG TACTCCACAA GATAAGAAAG CCTGTCAGTG TATTCGAACG TTATGAGGAG CTCTCACTTT CTCCCTTTCT CCCTCAGTTA ACAAGGGAGG TCCTCATTAA GTTGGAACAC ATTGACAGGC TTTCTTATCG AATCATTCGA ATTCAATGAC ATCATCTTCA CTTTTTCCCT GCTTCTCTGC TGCGCTTAAC AATTGCAGCA ACTGGCGTAT CCAAAGAGTG AATTAATCGA CATTTGCTGC AACAGTTGAG TATAATCAAC ATATTTGGGA CACTCGAAAA TTCTGTTATA TTGTCGCAGA TTTAACTCAG GTCCTTCAGC CTAGCCGATT CAATCAGGAA TTGACATCTA AAATCATTTG CTCCGCACAT CTTGAAAATG GAAAAATGAT ATAGATGATA AAGCACTCAA CAAATCAACA TTGTATATAC ACAAATACCT TTGCGAGTAA GCAAACCTCG GCCACCGAAG GCCAACACTA AGTACTGTAC GTAAGTTTCA TCACGAGCAA ACTCTGAATG TCAAGAATCT TGAAAACACT ATTGCTCCGT AAATCATTTA CACTCACCAC TTCAATAGGA |
CDS |
| >Mp4g13430.1 ATGTCTGGAC GCGGCAAGGG AGGTAAGGGT TTGGGCAAAG GAGGCGCCAA GCGTCATAGG AAGGTGTTCA GAGATAACAT CCAGGGAATC ACCAAGCCCG CCATCAGGCG TCTGGCCCGA CGAGGAGGAG TGAAGCGTAT CAGCGGGCTG ATTTACGAGG AGACTCGCGG AGTTCTGAAG ATCTTTCTGG AGAATGTGAT CCGAGATGCG GTGACGTACA CGGAGCACGC GAGGCGCAAG ACTGTGACTG CTATGGACGT GGTGTACGCG CTGAAGAGGC AGGGAAGAAC TCTGTACGGG TTCGGGGGGT AG |
Protein |
| >Mp4g13430.1 MSGRGKGGKG LGKGGAKRHR KVFRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG FGG |