Mp4g20670



Description

Annotation

Database ID Description
FunFam G3DSA:1.20.58.70:FF:000003 Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group
Pfam PF05739 SNARE domain
PANTHER PTHR19957 SYNTAXIN
CDD cd00179 SynN
SUPERFAMILY SSF47661 t-snare proteins
SMART SM00503 SynN_4
Pfam PF00804 Syntaxin
Gene3D G3DSA:1.20.58.70 -
CDD cd15848 SNARE_syntaxin1-like
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
FunFam G3DSA:1.20.5.110:FF:000008 Syntaxin 132
Gene3D G3DSA:1.20.5.110 -
Coils Coil Coil
SMART SM00397 tSNARE_6
KOG KOG0810 SNARE protein Syntaxin 1 and related proteins; [U]
MapolyID Mapoly0101s0013 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0005886 plasma membrane
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0006887 exocytosis
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP12B Common ortholog of both Arabidopsis SYP11 and SYP12 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Common ortholog of both Arabidopsis SYP11 and SYP12 genes; The transcript is detected in thalli, antheridiophores, and archegoniophores. Monomeric-Citrine-tagged MpSYP12B under the regulation of its own regulatory elements is expressed in oil body cells and localized to the envelopes of oil bodies and the plasma membrane. (from nomenclature)

2 core 9 peripheral

Kanazawa, T., et al. (2020) · Nature Communications  research experimental subject
Oil-body-cell-specific SYP1; localizes to oil body membrane; its promoter redirects SNAREs/cargo to the oil body — central to the redirection model.
Kanazawa, T., et al. (2016) · Plant and Cell Physiology  research experimental subject
Qa-SNARE (syntaxin); uniquely localized to the surface of the oil body, a liverwort-specific organelle — a distinctive feature of the M. polymorpha membrane-fusion machinery.
Kawamura, S., et al. (2022) · Plant & Cell Physiology  research citation tool
Protein known to be specifically expressed in oil body cells; used as a bait in the Functional Network analysis demonstration, found closely associated with MpMYB02.
Tanaka, M., et al. (2016b) · Phytochemistry  research experimental comparator
Oil-body-cell SNARE; mCitrine reporter used to mark oil body cells where sesquiterpenes and marchantin A localize in M. polymorpha.
Romani, F., et al. (2022) · Journal of Experimental Botany  research citation background
Review: cites MpSYP12B as required for oil-body (OB) cell formation; OB-cell-specific promoter.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g20670.1 chr4:27873633..27875956 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g20670 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g20670 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.