Mp4g21320



Description

Annotation

Database ID Description
PANTHER PTHR45625 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Gene3D G3DSA:2.40.100.10 -
PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
FunFam G3DSA:2.40.100.10:FF:000003 Peptidylprolyl isomerase domain and WD repeat-containing 1
SUPERFAMILY SSF50891 Cyclophilin-like
KEGG K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
KOG KOG0882 Cyclophilin-related peptidyl-prolyl cis-trans isomerase; N-term missing; [O]
MapolyID Mapoly0090s0089 -
GO GO:0000413 protein peptidyl-prolyl isomerization
GO GO:0003755 peptidyl-prolyl cis-trans isomerase activity
GO GO:0006457 protein folding

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Candidate gene near the ET239-P64 margin marker insertion site, annotated as a cyclophilin-type peptidyl-prolyl isomerase, identified by genomic analysis.

0 core 1 peripheral

Marron, A. O., et al. (2023) · The Plant Journal  research sequence subject
Candidate gene near the ET239-P64 margin marker insertion site, annotated as a cyclophilin-type peptidyl-prolyl isomerase, identified by genomic analysis.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g21320.1 chr4:28556032..28563935 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g21320 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g21320 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.