Mp5g00110



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39
SMART SM00356 c3hfinal6
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Coils Coil Coil
Gene3D G3DSA:2.40.50.1070 -
ProSiteProfiles PS51687 SAM-dependent methyltransferase RNA m(5)U-type domain profile.
Gene3D G3DSA:4.10.1000.10 -
CDD cd00590 RRM_SF
CDD cd02440 AdoMet_MTases
PANTHER PTHR45904 TRNA (URACIL-5-)-METHYLTRANSFERASE
ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1.
SUPERFAMILY SSF90229 CCCH zinc finger
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
Pfam PF05958 tRNA (Uracil-5-)-methyltransferase
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330 -
KEGG K15332 tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
KOG KOG2187 tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes; N-term missing; [J]
KOG KOG1677 CCCH-type Zn-finger protein; N-term missing; C-term missing; [R]
MapolyID Mapoly0078s0012 -
GO GO:0008173 RNA methyltransferase activity
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0006396 RNA processing
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H19 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g00110.1 chr5:248886..254881 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.