Mp5g06580



Description

Annotation

Database ID Description
ProSiteProfiles PS51204 HSA domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
Pfam PF00271 Helicase conserved C-terminal domain
FunFam G3DSA:3.40.50.10810:FF:000016 Chromatin structure-remodeling complex protein SYD
SMART SM00487 ultradead3
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
SMART SM01314 SnAC_2
FunFam G3DSA:3.40.50.300:FF:000871 Chromatin structure-remodeling complex protein SYD
Pfam PF00176 SNF2-related domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:3.40.50.10810 -
Pfam PF14619 Snf2-ATP coupling, chromatin remodelling complex
SMART SM00490 helicmild6
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
PANTHER PTHR10799 SNF2/RAD54 HELICASE FAMILY
CDD cd17996 DEXHc_SMARCA2_SMARCA4
KOG KOG0386 Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [BK]
KOG KOG4369 RTK signaling protein MASK/UNC-44; N-term missing; C-term missing; [T]
KOG KOG4701 Chitinase; N-term missing; [M]
KOG KOG3685 Uncharacterized conserved protein; C-term missing; [S]
KOG KOG3685 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MapolyID Mapoly0171s0025 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0003677 DNA binding
GO GO:0042393 histone binding
GO GO:0045944 positive regulation of transcription by RNA polymerase II

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.16 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g06580.1 chr5:8736305..8772965 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g06580.2 chr5:8736305..8772965 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.