Mp5g09790



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
Pfam PF00856 SET domain
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00317 set_7
CDD cd20071 SET_SMYD
SUPERFAMILY SSF82199 SET domain
Gene3D G3DSA:2.170.270.10 SET domain
ProSiteProfiles PS50280 SET domain profile.
SMART SM00028 tpr_5
ProSiteProfiles PS50005 TPR repeat profile.
Coils Coil Coil
SUPERFAMILY SSF48452 TPR-like
PANTHER PTHR47643 TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710)
KOG KOG0553 TPR repeat-containing protein; N-term missing; C-term missing; [R]
KOG KOG2084 Predicted histone tail methylase containing SET domain; C-term missing; [B]
MapolyID Mapoly0048s0091 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpATXR5 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g09790.1 chr5:13384606..13392363 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g09790.2 chr5:13384606..13389183 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.