Mp5g21520



Description

Annotation

Database ID Description
PANTHER PTHR24009 RNA-BINDING (RRM/RBD/RNP MOTIFS)
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.70.330 -
Pfam PF00076 RNA recognition motif
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
SMART SM00356 c3hfinal6
Coils Coil Coil
Gene3D G3DSA:4.10.1000.10 -
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SUPERFAMILY SSF90229 CCCH zinc finger
CDD cd12458 RRM_AtC3H46_like
FunFam G3DSA:3.30.70.330:FF:000678 zinc finger CCCH domain-containing protein 53-like isoform X2
ProSiteProfiles PS51644 OST-type HTH domain profile.
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMART SM00360 rrm1_1
KOG KOG2333 Uncharacterized conserved protein; C-term missing; [R]
KOG KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; N-term missing; C-term missing; [A]
MapolyID Mapoly0106s0048 -
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding
GO GO:0046872 metal ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H20 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g21520.1 chr5:27504064..27513815 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.