Mp5g23860



Description

Annotation

Database ID Description
ProSitePatterns PS00518 Zinc finger RING-type signature.
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF90229 CCCH zinc finger
SUPERFAMILY SSF57850 RING/U-box
Gene3D G3DSA:1.20.120.1750 -
Gene3D G3DSA:3.30.420.10 -
SUPERFAMILY SSF53098 Ribonuclease H-like
CDD cd22584 Rcat_RBR_unk
Pfam PF13456 Reverse transcriptase-like
Pfam PF01485 IBR domain, a half RING-finger domain
SMART SM00184 ring_2
PANTHER PTHR11685 RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
CDD cd22582 BRcat_RBR_unk
Pfam PF00097 Zinc finger, C3HC4 type (RING finger)
FunFam G3DSA:1.20.120.1750:FF:000019 RBR-type E3 ubiquitin transferase
ProSiteProfiles PS51873 TRIAD supradomain profile.
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Gene3D G3DSA:4.10.1000.10 -
FunFam G3DSA:3.30.40.10:FF:000230 RBR-type E3 ubiquitin transferase
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
ProSiteProfiles PS50089 Zinc finger RING-type profile.
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SMART SM00356 c3hfinal6
SMART SM00647 ibrneu5
FunFam G3DSA:4.10.1000.10:FF:000001 zinc finger CCCH domain-containing protein 15-like
KEGG K11975 E3 ubiquitin-protein ligase RNF144 [EC:2.3.2.31]
KOG KOG1812 Predicted E3 ubiquitin ligase; [O]
KOG KOG1677 CCCH-type Zn-finger protein; N-term missing; C-term missing; [R]
MapolyID Mapoly0010s0070 -
GO GO:0000151 ubiquitin ligase complex
GO GO:0004523 RNA-DNA hybrid ribonuclease activity
GO GO:0031624 ubiquitin conjugating enzyme binding
GO GO:0046872 metal ion binding
GO GO:0016567 protein ubiquitination
GO GO:0008270 zinc ion binding
GO GO:0004842 ubiquitin-protein transferase activity
GO GO:0006511 ubiquitin-dependent protein catabolic process
GO GO:0000209 protein polyubiquitination
GO GO:0061630 ubiquitin protein ligase activity
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding
GO GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H21 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g23860.1 chr5:30203689..30208967 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.