Mp6g10790



Description

Annotation

Database ID Description
Pfam PF13428 Tetratricopeptide repeat
ProSiteProfiles PS50005 TPR repeat profile.
FunFam G3DSA:1.25.40.10:FF:000304 Putative Pre-mRNA-splicing factor prp1
SMART SM00028 tpr_5
SMART SM00386 hat_new_1
Coils Coil Coil
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
SUPERFAMILY SSF48452 TPR-like
Pfam PF06424 PRP1 splicing factor, N-terminal
FunFam G3DSA:1.25.40.10:FF:000800 Protein STABILIZED1
PANTHER PTHR11246 PRE-MRNA SPLICING FACTOR
FunFam G3DSA:1.25.40.10:FF:000058 Pre-mRNA processing factor 6
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.25.40.10:FF:000384 Probable pre-mRNA splicing factor prp1
KEGG K12855 pre-mRNA-processing factor 6
KOG KOG0495 HAT repeat protein; [A]
MapolyID Mapoly0016s0118 -
GO GO:0046540 U4/U6 x U5 tri-snRNP complex
GO GO:2000636 positive regulation of primary miRNA processing
GO GO:0006396 RNA processing
GO GO:0005515 protein binding
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0071013 catalytic step 2 spliceosome
GO GO:0000244 spliceosomal tri-snRNP complex assembly
GO GO:0080188 gene silencing by siRNA-directed DNA methylation
GO GO:2000630 positive regulation of miRNA metabolic process

Nomenclature

Gene symbol Product Transcript ID Status
MpSTA1 PRE-MRNA-PROCESSING FACTOR 6 Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g10790.1 chr6:13755867..13759800 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.