Mp6g11010



Description

Annotation

Database ID Description
SMART SM00268 actin_3
FunFam G3DSA:3.30.420.40:FF:000291 Actin, alpha skeletal muscle
SUPERFAMILY SSF53067 Actin-like ATPase domain
ProSitePatterns PS01132 Actins and actin-related proteins signature.
FunFam G3DSA:3.30.420.40:FF:000058 Putative actin-related protein 5
ProSitePatterns PS00432 Actins signature 2.
Gene3D G3DSA:3.30.420.40 -
CDD cd00012 NBD_sugar-kinase_HSP70_actin
PRINTS PR00190 Actin signature
FunFam G3DSA:3.30.420.40:FF:000404 Major actin
FunFam G3DSA:3.90.640.10:FF:000001 Actin, muscle
Pfam PF00022 Actin
ProSitePatterns PS00406 Actins signature 1.
PANTHER PTHR11937 ACTIN
Gene3D G3DSA:3.90.640.10 Actin; Chain A, domain 4
KEGG K10355 actin, other eukaryote
KOG KOG0676 Actin and related proteins; [Z]
MapolyID Mapoly0016s0139 -

Nomenclature

Gene symbol Product Transcript ID Status
MpACTIN7 Housekeeping Provisional

Associated Literature (AI-based literature mining, Beta-version)

Housekeeping (from nomenclature)

0 core 23 peripheral

Koebke, E., et al. (2022) · Frontiers in Plant Science  research citation tool
Actin reference gene used for qPCR normalization; primers described previously.
Schmid, M. W., et al. (2018) · Genome Biology  research experimental tool
Used as a reference gene for expression normalization, reported to be evenly expressed across M. polymorpha developmental stages.
Furumoto, T., et al. (2024) · Plant & Cell Physiology  research experimental tool
Actin 7 gene used as an internal reference for RT-qPCR normalization; no functional investigation.
Ros-Moner, E., et al. (2024) · Nature Communications  research experimental tool
Used as the housekeeping reference gene for normalizing RT-qPCR expression (2^-DeltaCt method).
Liang, Y., et al. (2022) · Science Advances  research experimental tool
Constitutive actin gene (Mp6g11010) used as a reference gene for RT-qPCR normalization.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g11010.1 chr6:13963626..13966707 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g11010 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g11010 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.