Mp6g21420



Description

Annotation

Database ID Description
PANTHER PTHR12620 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00356 c3hfinal6
Pfam PF00076 RNA recognition motif
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
SMART SM00361 rrm2_1
SUPERFAMILY SSF54928 RNA-binding domain, RBD
PRINTS PR01848 U2 auxiliary factor small subunit signature
SMART SM00360 rrm1_1
Gene3D G3DSA:3.30.70.330 -
FunFam G3DSA:3.30.70.330:FF:000122 Splicing factor U2AF small subunit
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
KEGG K12836 splicing factor U2AF 35 kDa subunit
KOG KOG2202 U2 snRNP splicing factor, small subunit, and related proteins; [A]
MapolyID Mapoly0091s0013 -
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0030628 pre-mRNA 3'-splice site binding
GO GO:0089701 U2AF complex
GO GO:0003676 nucleic acid binding
GO GO:0005681 spliceosomal complex

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H26 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g21420.1 chr6:27726579..27731796 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21420.2 chr6:27726579..27731796 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21420.3 chr6:27726579..27731628 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.