Mp7g10380



Description

Annotation

Database ID Description
SUPERFAMILY SSF75553 Smc hinge domain
Coils Coil Coil
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:1.10.287.1490 -
Gene3D G3DSA:3.40.50.300 -
Pfam PF02463 RecF/RecN/SMC N terminal domain
PANTHER PTHR19306 STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
KEGG K22804 structural maintenance of chromosomes protein 6
KOG KOG0250 DNA repair protein RAD18 (SMC family protein); [L]
MapolyID Mapoly0003s0057 -
GO GO:0005634 nucleus
GO GO:0030915 Smc5-Smc6 complex
GO GO:0005524 ATP binding
GO GO:0051276 chromosome organization
GO GO:0005515 protein binding
GO GO:0003684 damaged DNA binding
GO GO:0035861 site of double-strand break
GO GO:0003697 single-stranded DNA binding
GO GO:0005694 chromosome
GO GO:0000724 double-strand break repair via homologous recombination

Nomenclature

Gene symbol Product Transcript ID Status
MpSMC6 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g10380.1 chr7:13585244..13599119 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g10380.2 chr7:13585244..13599064 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.