Mp7g11720



Description

Annotation

Database ID Description
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00487 ultradead3
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain
Pfam PF14709 double strand RNA binding domain from DEAD END PROTEIN 1
Gene3D G3DSA:3.40.50.300 -
Pfam PF00636 Ribonuclease III domain
Gene3D G3DSA:3.30.160.380 Dicer dimerisation domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00490 helicmild6
PANTHER PTHR14950 DICER-RELATED
SMART SM00358 DRBM_3
CDD cd18034 DEXHc_dicer
CDD cd19869 DSRM_DCL_plant
FunFam G3DSA:3.30.160.380:FF:000001 Endoribonuclease dicer-like 1
Pfam PF02170 PAZ domain
CDD cd00593 RIBOc
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00949 PAZ_2_a_3
SMART SM00535 riboneu5
SUPERFAMILY SSF54768 dsRNA-binding domain-like
SUPERFAMILY SSF69065 RNase III domain-like
Pfam PF03368 Dicer dimerisation domain
FunFam G3DSA:1.10.1520.10:FF:000004 Endoribonuclease dicer-like 1
Gene3D G3DSA:3.30.160.20 -
FunFam G3DSA:3.40.50.300:FF:000705 Endoribonuclease dicer-like protein
SUPERFAMILY SSF101690 PAZ domain
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
ProSiteProfiles PS50821 PAZ domain profile.
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:2.170.260.10 paz domain
Pfam PF04851 Type III restriction enzyme, res subunit
ProSitePatterns PS00517 Ribonuclease III family signature.
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
MapolyID Mapoly0003s0184 -
GO GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0016787 hydrolase activity
GO GO:0005524 ATP binding
GO GO:0006396 RNA processing
GO GO:0030422 siRNA processing
GO GO:0005515 protein binding
GO GO:0004525 ribonuclease III activity
GO GO:0003677 DNA binding
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL4 miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g11720.1 chr7:14940682..14970037 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.