Mp7g15670



Description

Annotation

Database ID Description
SMART SM00717 sant
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:1.20.120.850 -
SMART SM00490 helicmild6
ProSiteProfiles PS51204 HSA domain profile.
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Coils Coil Coil
Gene3D G3DSA:3.40.50.300 -
CDD cd00167 SANT
CDD cd18003 DEXQc_SRCAP
Pfam PF00271 Helicase conserved C-terminal domain
SMART SM00573 bromneu2
PANTHER PTHR45685 HELICASE SRCAP-RELATED
Gene3D G3DSA:3.40.50.10810 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
ProSiteProfiles PS50090 Myb-like domain profile.
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
FunFam G3DSA:1.20.120.850:FF:000012 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X3
FunFam G3DSA:3.40.50.10810:FF:000005 Photoperiod-independent early flowering 1
SMART SM00487 ultradead3
SUPERFAMILY SSF46689 Homeodomain-like
Pfam PF13921 Myb-like DNA-binding domain
Pfam PF07529 HSA domain
FunFam G3DSA:3.40.50.300:FF:000655 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
Pfam PF00176 SNF2-related domain
KEGG K11661 helicase SRCAP/SWR1 [EC:5.6.2.-]
KOG KOG0391 SNF2 family DNA-dependent ATPase; C-term missing; [R]
KOG KOG4462 WASP-interacting protein VRP1/WIP, contains WH2 domain; N-term missing; [Z]
MapolyID Mapoly0111s0052 -
GO GO:0000812 Swr1 complex
GO GO:0005524 ATP binding
GO GO:0043486 obsolete histone exchange
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0042393 histone binding
GO GO:0043044 chromatin remodeling

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.21 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g15670.1 chr7:19489729..19507560 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.