Mp8g08450



Description

Annotation

Database ID Description
PANTHER PTHR10799 SNF2/RAD54 HELICASE FAMILY
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
Pfam PF00176 SNF2-related domain
CDD cd17919 DEXHc_Snf
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.40.50.10810 -
FunFam G3DSA:3.40.50.10810:FF:000038 Protein CHROMATIN REMODELING 19 isoform A
SMART SM00490 helicmild6
SMART SM00487 ultradead3
CDD cd18793 SF2_C_SNF
Pfam PF00271 Helicase conserved C-terminal domain
KEGG K14439 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
KOG KOG0389 SNF2 family DNA-dependent ATPase; N-term missing; [B]
MapolyID Mapoly0063s0073 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.23 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g08450.1 chr8:11345839..11349703 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.