Mp8g17910



Description

Annotation

Database ID Description
CDD cd16100 ARID
PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE
Pfam PF02928 C5HC2 zinc finger
SMART SM01014 ARID_2
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00501 bright_3
Pfam PF01388 ARID/BRIGHT DNA binding domain
SMART SM00249 PHD_3
Gene3D G3DSA:2.60.120.650 Cupin
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Pfam PF08429 PLU-1-like protein
ProSiteProfiles PS51183 JmjN domain profile.
Pfam PF21323 Lysine-specific demethylase 5, C-terminal helical domain
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
SUPERFAMILY SSF46774 ARID-like
ProSiteProfiles PS51011 ARID domain profile.
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SMART SM00545 JmjN_1
SUPERFAMILY SSF51197 Clavaminate synthase-like
CDD cd15543 PHD_RSF1
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
SMART SM00558 cupin_9
ProSiteProfiles PS51184 JmjC domain profile.
Pfam PF00628 PHD-finger
Pfam PF02375 jmjN domain
Pfam PF02373 JmjC domain, hydroxylase
KEGG K11446 [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
KOG KOG1246 DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; C-term missing; [R]
KOG KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain; N-term missing; C-term missing; [K]
KOG KOG1973 Chromatin remodeling protein, contains PHD Zn-finger; N-term missing; [B]
KOG KOG0958 DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily; C-term missing; [L]
KOG KOG0994 Extracellular matrix glycoprotein Laminin subunit beta; N-term missing; [W]
KOG KOG0383 Predicted helicase; C-term missing; [R]
MapolyID Mapoly0030s0125 -
GO GO:0005634 nucleus
GO GO:0010468 regulation of gene expression
GO GO:0006338 chromatin remodeling
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0032452 histone demethylase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpARID2 transcription factor, ARID Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g17910.1 chr8:22839006..22861017 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.