MpVg00980



Description

Annotation

Database ID Description
FunFam G3DSA:3.30.70.330:FF:000062 serine/arginine-rich splicing factor SR34A-like
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.70.330 -
FunFam G3DSA:3.30.70.330:FF:000244 serine/arginine-rich splicing factor SR34A-like
PANTHER PTHR23003 RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Pfam PF00076 RNA recognition motif
CDD cd12599 RRM1_SF2_plant_like
CDD cd12602 RRM2_SF2_plant_like
SMART SM00360 rrm1_1
SUPERFAMILY SSF54928 RNA-binding domain, RBD
KEGG K12890 serine/arginine-rich splicing factor 1
KOG KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily); [A]
MapolyID MapolyY_A0024 -
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0003729 mRNA binding
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSR7 SR proteins, RNA-splicing Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
MpVg00980.1 chrV:5916607..5933278 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
MpVg00980.2 chrV:5916607..5933278 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.