Mp4g00180



Description

Annotation

Database ID Description
Coils Coil Coil
FunFam G3DSA:2.20.25.80:FF:000002 probable WRKY transcription factor 31
Gene3D G3DSA:2.20.25.80 WRKY domain
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR31429 WRKY TRANSCRIPTION FACTOR 36-RELATED
Pfam PF03106 WRKY DNA -binding domain
ProSiteProfiles PS50811 WRKY domain profile.
SMART SM00774 WRKY_cls
SUPERFAMILY SSF118290 WRKY DNA-binding domain
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0043565 sequence-specific DNA binding
MapolyID Mapoly0162s0003 -

Nomenclature

Gene symbol Product Transcript ID Status
MpWRKY13 transcription factor, WRKY Published

Associated Literature (AI-based literature mining)

transcription factor, WRKY (from nomenclature)

0 core 1 peripheral

Marron, A. O., et al. (2023) · The Plant Journal  research sequence subject
WRKY-family candidate gene located near the ET239-P54 oil cell marker insertion site, identified via genomic analysis of the trapped region.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g00180.1 chr4:302526..309529 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g00180 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g00180 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.