Mp5g24460



Description

Annotation

Database ID Description
CDD cd15532 PHD2_CHD_II
CDD cd18659 CD2_tandem
CDD cd18660 CD1_tandem
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:1.10.10.60 -
Gene3D G3DSA:2.40.50.40 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
Gene3D G3DSA:3.40.50.10810 -
Gene3D G3DSA:3.40.50.300 -
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG0825 PHD Zn-finger protein; C-term missing; [R]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Pfam PF00176 SNF2-related domain
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Pfam PF00628 PHD-finger
Pfam PF06461 CHD subfamily II, SANT-like domain
Pfam PF06465 CHD subfamily II, DUF1087
Pfam PF07432 Histone H1-like protein Hc1
ProSitePatterns PS01359 Zinc finger PHD-type signature.
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00249 PHD_3
SMART SM00298 chromo_7
SMART SM00487 ultradead3
SMART SM00490 helicmild6
SMART SM01146 DUF1086_2
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF54160 Chromo domain-like
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0030527 structural constituent of chromatin
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding
MapolyID Mapoly0010s0012 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.17 Chromatin related protein Provisional

Associated Literature (AI-based literature mining)

PICKLE-LIKE 1, a Marchantia PKL homolog identified by sequence similarity. Authors generated a CRISPR pll1 mutant; transcriptome profiling showed DEGs largely overlapping with pll2/pll3, supporting functional redundancy. Y2H showed MpPLL1 interacts with MpTCP1, MpHY5 and MpPIF, indicating conserved cooperation of liverwort PKL homologs with these TFs.

1 core 0 peripheral

Song M, Wang Y, Ma T, Terzaghi W, He K, Wang H, Xu B, Jing Y, Lin R, Deng XW, Zhu D, Wang Y. (2025) · Nucleic acids research  research experimental subject
PICKLE-LIKE 1, a Marchantia PKL homolog identified by sequence similarity. Authors generated a CRISPR pll1 mutant; transcriptome profiling showed DEGs largely overlapping with pll2/pll3, supporting functional redundancy. Y2H showed MpPLL1 interacts with MpTCP1, MpHY5 and MpPIF, indicating conserved cooperation of liverwort PKL homologs with these TFs.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g24460.1 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.2 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.3 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g24460 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g24460 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.