Song M, Wang Y, Ma T, Terzaghi W, He K, Wang H, Xu B, Jing Y, Lin R, Deng XW, Zhu D, Wang Y. · 2025 · Nucleic acids research research
doi:10.1093/nar/gkaf1376 PMID:41359383 PMC12684393
| Gene ID | Name | Evidence / Role | Function (this paper) |
|---|---|---|---|
| Mp4g00040 | Mp1R-MYB20 | experimental subject | PICKLE-LIKE 2, a Marchantia PKL homolog. A CRISPR pll2 mutant was generated and showed growth defects and DEGs overlapping pll1/pll3. APA of Hi-C data showed TCP1-distal-targeted histone-modified regions were spatially aggregated in WT but dispersed in the pll2 mutant. MpPLL2 also interacts with MpTCP1, MpHY5 and MpPIF by Y2H. |
| Mp1g16800 | MpBZIP1 | experimental subject | Marchantia HY5 transcription factor shown by Y2H to interact with MpPLL1 and MpPLL2, supporting conserved partnership of liverwort PKL homologs with this TF. |
| Mp3g17350 | MpPIF | experimental subject | Marchantia PIF transcription factor shown by Y2H to interact with MpPLL1 and MpPLL2, supporting conserved partnership of liverwort PKL homologs with this TF. |
| Mp5g24460 | Mpsnf1.17 | experimental subject | PICKLE-LIKE 1, a Marchantia PKL homolog identified by sequence similarity. Authors generated a CRISPR pll1 mutant; transcriptome profiling showed DEGs largely overlapping with pll2/pll3, supporting functional redundancy. Y2H showed MpPLL1 interacts with MpTCP1, MpHY5 and MpPIF, indicating conserved cooperation of liverwort PKL homologs with these TFs. |
| Mp1g05480 | Mpsnf1.2 | experimental subject | PICKLE-LIKE 3, a Marchantia PKL homolog. A CRISPR pll3 mutant was generated and exhibited growth defects, with DEGs largely overlapping pll1/pll2, supporting redundancy among the three liverwort PKL homologs. |
| Mp7g09490 | MpTCP1 | experimental subject | Marchantia TCP transcription factor. ChIP showed MpTCP1 binding enriched around TSS; in a tcp1 mutant the spatial aggregation of TCP1-distal-targeted histone-modified regions was lost (dispersed), paralleling the pll2 mutant, indicating MpPLL/MpTCP1 cooperate in spatial chromatin congregation. MpTCP1 also interacts with MpPLL1/MpPLL2 by Y2H. ID NOTE: the paper's accession list prints "MpTCP1, Mp7g01530", but Mp7g01530 (Mapoly0099s0028) is a TCP-1/cpn60 chaperonin (CCT1; Pfam PF00118, KEGG K09493) and cannot be a TSS-binding transcription factor. The TCP transcription factor MpTCP1 is Mp7g09490 (Mapoly0068s0102; Pfam PF03634), the locus registered in MarpolBase and used by Busch et al. 2019 / Karaaslan et al. 2020. Curated here to Mp7g09490; the paper's printed ID is almost certainly a lookup hit on the chaperonin's "TCP-1" product name. |