RNA polymerase sigma factor
| Database | ID | Description |
|---|---|---|
| PFAM | PF04539 | Sigma-70 region 3 |
| GO | GO:0003677 | DNA binding |
| PANTHER | PTHR30603 | RNA POLYMERASE SIGMA FACTOR RPO |
| GO | GO:0006355 | regulation of transcription, DNA-dependent |
| GO | GO:0006352 | DNA-dependent transcription, initiation |
| GO | GO:0003700 | sequence-specific DNA binding transcription factor activity |
| KEGGORTH | K03093 | RNA polymerase sigma factor |
| PANTHER | PTHR30603:SF4 | |
| PFAM | PF04542 | Sigma-70 region 2 |
| PFAM | PF04545 | Sigma-70, region 4 |
| GO | GO:0016987 | sigma factor activity |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSIG5 | Ortholog of Arabidopsis SIG5 gene | Published |
Sequences: |
Gene UTR + CDS + intron |
| >Mapoly0007s0213.1 CCCCCTCGGA GCTCCTCGCT GCTGCTGCTG CTGCCTCGTC GTCGTCGGCG GGGGAAAGGA GAGGGGGTGA AAGGTAAGAA GGCGAGAGGC GGAGGGGCAT GTAGCGCATC ATCATCGTCA ACTGGCTCAG AACTCTGACA CCGAATCCCC CACTTGGTCC GGCGCCATTG CACCGTTCCG GAGCGGGACG CTTCAGCCTC TGCGTGTAGG ATCCTGGACC CAGCACATTC TCGGAAAGCC AGCAGCAGCC CGAGCTGAAT CAGAGCAGTC GAGCAGTCGA GCAGTCGACG AGACGGGAAG GTTCCAGAGT CGAGTCGAGT CCGTTCCCGC TCACGTCGAT GATCCCCTAG CGGGGCTTGA GTGGTGGTCA AGCCATAGAG TGCAGACGTG CGAGCTTGCA CAGCTCCGTA TAAAGATAGA AAGAAAAGCG CAGCAGCATT GTCAGACGAC AATAAGTCTC GAGAGTCCTA CAGACTCCTG TACAGTGGCA TTGTCTCTCC GAGCATCCAC GTCCCCGAAA CGACAGCACG AAAGAAAGAA AGAAACAAAC ACTGAAACAA GGTCTCTGAG AGAGACGAGA GAAGGGAGGA CATTGGTTCT TCAAGAGCTG AAGAGGGTCG TTGTGTTGGA GGAATCGGTG GTAGTTGGAT CGTAGAGGAA GGTCGGAACG AAAGCTTGAT TGAGAGTGTG ATTCAAAGGT GTGCACAGCG GATGGTTTGA GAGGGCGGGA CTGCCCACCC AGACAGTCAG ACAGGATACG AGGGTGCGCG AGAATCGGAG CAGCACGGAC ACATCGTGAT TTGCGAGAGT TGCGAGAGCT GCGAGAGGAC GAGAATTTGG TAGGTGAGTG GCGAGGCGAG GCGAGGCGAG GGGAGGGGAG GGGAGGGGAG CTCCACGGCG GGGGCGGTCG GAGATGGAAA GAGTTGGAAG AATTCATCCG TCTGGCGCTG GCGCGGTGCT TGTGAATGGT TGCTGCTGTG GGGGTCCGGC CAGCAGCAGC AGCAGCACCA AATTGGGAGC AGGCTCAGAG AGCAGCAGGG CGATCACTCG GCTGCCGATC TCGCTGTCGA CCATCGTCAT TGACCGGTTG CCCAGGGCGG GGCTCAGAGT GGGCAGGTTG AAGCGAAGGT CCTCGTCCTT AACCAGATTC TCCGTCGTTG CAGCAGCAGC TGCTGCTGCA GCCGCAGCTT CGGTCGACAC TGCCTACGCC CCAGAAAGGC TCGTAGACGA TGCGAAGCGG TCGAGGAAGC CGAGACGCAG AAAAGACGCA CTTGCCAATG CCGAATCGAA TGCCACCGTC CCCATTTCTG CTGCCACCAC CAAAAATCTC GCTTCCACTG ACAAGGAGCT GCTGAGATTG GCTCGAGCGC TCGAGAACGC CTACTTCCAA GACTCGCCGC TGCCATCTCT CCCCACAGAG CTGCCCGATA AATCCAGCAG TGTGATGCTC GATGATCTCG TCACGCAAAT TAGACCCGTC GCCATCGATG GCTCCATAGA TTACACCACT CCCACGACTT CTTCCTCCAG TGCGCCGTCT GCGTCGACGA AGGTGAAGAA GAAGCGAGGC AGAAAAGTCG CCGCCTCGAG GAGCATCGAG CATCTGCCGC AGCAGCCGAG CATGGACATT AATCAGAATC AAAATCAGAA TGCCTCGGGA AGGTTTAGTC CTGCAGAGTC GCCGCCCGCG AGAGCTGCCA CGGCTGGAGA GGTGACGGGC AAGCGCAGAC TGAATTTGGT TTCTCGAATC GCTCTCCGGA GAAAGCGGCA GGAGCTGTCG AAGAAGGATT TGGATGCGAA TGTGAAGATT AGCAAAGACG GGCACGACAT TTGGTCGGAG GATGCCGAGA AGCTCATCAC CAAGTACGCC TCGTCGCTCG ATTTCGGTGT CGTCGATTGG GACAGTCTGA GCCGCGACCT GCTCTCGGCC GAAGAAGAAT ACTCGCTCGC CAGCCTCATG AAGCCCGCCA AGGTAAAGAA TGAAATCATG CTCCTAATGC TGTGGCTGCA CGCAATTGCG CCTGCCCTAG TTTCTGGTGT CATGTGAGTG ATGATGTGAT TTGCTGGCGT GACTGAACCC GAAGCGATTG TTGGATTGGC AGAAATTAGA AAAGACTTTC AAAGCCATCG GCGAAGAGCT CGGCCGCGAT CCATCCGACG AAGAATGGGC CAAAGCTGCG CAATTGGACG TGCACACCCT GAAGCGTCAG GTTCTGCTGG GCCGAGCTGC GAGAAATAAA CTGATTCAGG TACAAATTTT AAACCGCAAT CTTCTTAACC CTCTTCACTC AATTTCATGG AAATGTAATC GAGCACGAAC ATAAATCATG CTCGCAAACG GGGATTTCAA TCTGAGGCTG GCCTCTAGTC CTCTTCCTGA TGTCTGTCTG GCTTCCTTCG AGAAGAATGT CCGCAACTAT CATCGAGAGG AAGGAGGCCG ATGCACATTC ATGACAGGTT GACTGAATTG TGGCGATGTG ATGTTTGCAG CACAACCTGC GTCTCGTGCT CTTCCAAGCG CACAAGTATC AGAAGGATAA TTCGAGCTTA TCGCTCTTCG ACCTCTGCCA AGAAGGAGTG TCGGGCTTGC TGCACGGGGT GGACAAATTC GACCCCAAGA GAGGGCACAG GTTCTCCACT TACGCTGTCT ACTGGGTGCG CAACTCCATT CTCAGGGCGA TGACGAGATC CGGAAGCGTG CTCCGCTCAC CGTACAATGT TGCCATGGTA TGAATGCCCT CCAATCCGCC GTCATGTGCC CCAATGTCAG TCCTCAATTC TGCCTTCTGA TTACACGATC GGAATCGTTG ACTTGCTCGT TCGAGAGGTA TCGCCCATCA CATTGTGACG GCAGCAAAAT TCGGAGTGAG TGGTGAATTG AACGAGGTTT GTGGGGCTTT GTGATTTGTG CAGCACAAGT GGAACATCAA GAGGGCGAGG CTCGATCTGC TGGTGGAGCT CGAGAGAGCA GCCACTGACG CAGAGGTGAT GGAGCGATTG GGCATCGCGC CGGATCGGTT TCGCGACATC GTTCGCTCGA GCACGCGCGC CAGATCCATT CACCAGCGCT CGCTGCTGAC CGGAGAAGAA TTCGTGGAGA ATATCGTCGA CTCGCAGAAC CGCGACGGGC ACAGCGCTGC AGCAGATACC GCTCTTCTGT CAATCGATGA TGTTGTAAGT TCCTCCGTGA CCCACCCAGA CTCTTCATCG TCCCTGTTTC TTCTCGTGAT ATTCTATCTA TCCACCAAAA GGTCGAAAAT TTGCGCATTG CCTGCGTCGA TTCCCCCCCA TGGGATGTGC TGAAGGTCGT AGACCGAAGA ATTGGCAGGA CGTGCACGTT TGAGATTGGC TATGGATCAG ATGTGGGGAG GGATTGCACG ATTGTTGTTG CTGGAGTCTG ATTTTTGTTC GTGTGCTTGG TCCTGCAGCT CGACTCATTG AAGCCCAAGG AGAGTTTTGT GTTGAGCCAG AGGTTTGGGC TGGACGGGAA GGGCGAGCGA ACTTTGAGCG AAATAGGAAA GAACATGAAT TTGTCGAGGG AAATGGTGCG GCGCTACGAG GCCTGCGGCT TGTTGAAAAT GAAGCACCCC ACGCGCCTGG ACTATCTGCG CAACTACCTC GCGACTGAGA CCTGATTGTG ACCTTCTCTG TTCTCGTAGA CTGTTAGCAG ACTTGTAATT TATGTACTAT ATTTTGTAGT GTAGGGCCAA ATTTCACGCA GCAGCAAAGT TTTCGCCACA CCAATTCGTT CATACTTGTA AGCAGTTTGT GGAGGTTTGC CAATTCTTGA TCGTAGAAGA TTCATTCGTC AATCTCTCCG AATCCCCTCG CGTGTAATCT TCCTCAAAAA ATATTTCCAA TACTCTTCGA GCGTGTTCTT CCTCGAACTG TCAACGTTGT GGGCTGTACC GTACATTTTG ATCTTTACAA CTCATGCAGC TGAACCCATG GATAAATGTA TAATAAATCT TTGCAATCAA GACACATT |
mRNA UTR + CDS |
| >Mapoly0007s0213.1 CCCCCTCGGA GCTCCTCGCT GCTGCTGCTG CTGCCTCGTC GTCGTCGGCG GGGGAAAGGA GAGGGGGTGA AAGGTAAGAA GGCGAGAGGC GGAGGGGCAT GTAGCGCATC ATCATCGTCA ACTGGCTCAG AACTCTGACA CCGAATCCCC CACTTGGTCC GGCGCCATTG CACCGTTCCG GAGCGGGACG CTTCAGCCTC TGCGTGTAGG ATCCTGGACC CAGCACATTC TCGGAAAGCC AGCAGCAGCC CGAGCTGAAT CAGAGCAGTC GAGCAGTCGA GCAGTCGACG AGACGGGAAG GTTCCAGAGT CGAGTCGAGT CCGTTCCCGC TCACGTCGAT GATCCCCTAG CGGGGCTTGA GTGGTGGTCA AGCCATAGAG TGCAGACGTG CGAGCTTGCA CAGCTCCGTA TAAAGATAGA AAGAAAAGCG CAGCAGCATT GTCAGACGAC AATAAGTCTC GAGAGTCCTA CAGACTCCTG TACAGTGGCA TTGTCTCTCC GAGCATCCAC GTCCCCGAAA CGACAGCACG AAAGAAAGAA AGAAACAAAC ACTGAAACAA GGTCTCTGAG AGAGACGAGA GAAGGGAGGA CATTGGTTCT TCAAGAGCTG AAGAGGGTCG TTGTGTTGGA GGAATCGGTG GTAGTTGGAT CGTAGAGGAA GGTCGGAACG AAAGCTTGAT TGAGAGTGTG ATTCAAAGGT GTGCACAGCG GATGGTTTGA GAGGGCGGGA CTGCCCACCC AGACAGTCAG ACAGGATACG AGGGTGCGCG AGAATCGGAG CAGCACGGAC ACATCGTGAT TTGCGAGAGT TGCGAGAGCT GCGAGAGGAC GAGAATTTGG TAGGTGAGTG GCGAGGCGAG GCGAGGCGAG GGGAGGGGAG GGGAGGGGAG CTCCACGGCG GGGGCGGTCG GAGATGGAAA GAGTTGGAAG AATTCATCCG TCTGGCGCTG GCGCGGTGCT TGTGAATGGT TGCTGCTGTG GGGGTCCGGC CAGCAGCAGC AGCAGCACCA AATTGGGAGC AGGCTCAGAG AGCAGCAGGG CGATCACTCG GCTGCCGATC TCGCTGTCGA CCATCGTCAT TGACCGGTTG CCCAGGGCGG GGCTCAGAGT GGGCAGGTTG AAGCGAAGGT CCTCGTCCTT AACCAGATTC TCCGTCGTTG CAGCAGCAGC TGCTGCTGCA GCCGCAGCTT CGGTCGACAC TGCCTACGCC CCAGAAAGGC TCGTAGACGA TGCGAAGCGG TCGAGGAAGC CGAGACGCAG AAAAGACGCA CTTGCCAATG CCGAATCGAA TGCCACCGTC CCCATTTCTG CTGCCACCAC CAAAAATCTC GCTTCCACTG ACAAGGAGCT GCTGAGATTG GCTCGAGCGC TCGAGAACGC CTACTTCCAA GACTCGCCGC TGCCATCTCT CCCCACAGAG CTGCCCGATA AATCCAGCAG TGTGATGCTC GATGATCTCG TCACGCAAAT TAGACCCGTC GCCATCGATG GCTCCATAGA TTACACCACT CCCACGACTT CTTCCTCCAG TGCGCCGTCT GCGTCGACGA AGGTGAAGAA GAAGCGAGGC AGAAAAGTCG CCGCCTCGAG GAGCATCGAG CATCTGCCGC AGCAGCCGAG CATGGACATT AATCAGAATC AAAATCAGAA TGCCTCGGGA AGGTTTAGTC CTGCAGAGTC GCCGCCCGCG AGAGCTGCCA CGGCTGGAGA GGTGACGGGC AAGCGCAGAC TGAATTTGGT TTCTCGAATC GCTCTCCGGA GAAAGCGGCA GGAGCTGTCG AAGAAGGATT TGGATGCGAA TGTGAAGATT AGCAAAGACG GGCACGACAT TTGGTCGGAG GATGCCGAGA AGCTCATCAC CAAGTACGCC TCGTCGCTCG ATTTCGGTGT CGTCGATTGG GACAGTCTGA GCCGCGACCT GCTCTCGGCC GAAGAAGAAT ACTCGCTCGC CAGCCTCATG AAGCCCGCCA AGAAATTAGA AAAGACTTTC AAAGCCATCG GCGAAGAGCT CGGCCGCGAT CCATCCGACG AAGAATGGGC CAAAGCTGCG CAATTGGACG TGCACACCCT GAAGCGTCAG GTTCTGCTGG GCCGAGCTGC GAGAAATAAA CTGATTCAGC ACAACCTGCG TCTCGTGCTC TTCCAAGCGC ACAAGTATCA GAAGGATAAT TCGAGCTTAT CGCTCTTCGA CCTCTGCCAA GAAGGAGTGT CGGGCTTGCT GCACGGGGTG GACAAATTCG ACCCCAAGAG AGGGCACAGG TTCTCCACTT ACGCTGTCTA CTGGGTGCGC AACTCCATTC TCAGGGCGAT GACGAGATCC GGAAGCGTGC TCCGCTCACC GTACAATGTT GCCATGCACA AGTGGAACAT CAAGAGGGCG AGGCTCGATC TGCTGGTGGA GCTCGAGAGA GCAGCCACTG ACGCAGAGGT GATGGAGCGA TTGGGCATCG CGCCGGATCG GTTTCGCGAC ATCGTTCGCT CGAGCACGCG CGCCAGATCC ATTCACCAGC GCTCGCTGCT GACCGGAGAA GAATTCGTGG AGAATATCGT CGACTCGCAG AACCGCGACG GGCACAGCGC TGCAGCAGAT ACCGCTCTTC TGTCAATCGA TGATGTTCTC GACTCATTGA AGCCCAAGGA GAGTTTTGTG TTGAGCCAGA GGTTTGGGCT GGACGGGAAG GGCGAGCGAA CTTTGAGCGA AATAGGAAAG AACATGAATT TGTCGAGGGA AATGGTGCGG CGCTACGAGG CCTGCGGCTT GTTGAAAATG AAGCACCCCA CGCGCCTGGA CTATCTGCGC AACTACCTCG CGACTGAGAC CTGATTGTGA CCTTCTCTGT TCTCGTAGAC TGTTAGCAGA CTTGTAATTT ATGTACTATA TTTTGTAGTG TAGGGCCAAA TTTCACGCAG CAGCAAAGTT TTCGCCACAC CAATTCGTTC ATACTTGTAA GCAGTTTGTG GAGGTTTGCC AATTCTTGAT CGTAGAAGAT TCATTCGTCA ATCTCTCCGA ATCCCCTCGC GTGTAATCTT CCTCAAAAAA TATTTCCAAT ACTCTTCGAG CGTGTTCTTC CTCGAACTGT CAACGTTGTG GGCTGTACCG TACATTTTGA TCTTTACAAC TCATGCAGCT GAACCCATGG ATAAATGTAT AATAAATCTT TGCAATCAAG ACACATT |
CDS |
| >Mapoly0007s0213.1 ATGGAAAGAG TTGGAAGAAT TCATCCGTCT GGCGCTGGCG CGGTGCTTGT GAATGGTTGC TGCTGTGGGG GTCCGGCCAG CAGCAGCAGC AGCACCAAAT TGGGAGCAGG CTCAGAGAGC AGCAGGGCGA TCACTCGGCT GCCGATCTCG CTGTCGACCA TCGTCATTGA CCGGTTGCCC AGGGCGGGGC TCAGAGTGGG CAGGTTGAAG CGAAGGTCCT CGTCCTTAAC CAGATTCTCC GTCGTTGCAG CAGCAGCTGC TGCTGCAGCC GCAGCTTCGG TCGACACTGC CTACGCCCCA GAAAGGCTCG TAGACGATGC GAAGCGGTCG AGGAAGCCGA GACGCAGAAA AGACGCACTT GCCAATGCCG AATCGAATGC CACCGTCCCC ATTTCTGCTG CCACCACCAA AAATCTCGCT TCCACTGACA AGGAGCTGCT GAGATTGGCT CGAGCGCTCG AGAACGCCTA CTTCCAAGAC TCGCCGCTGC CATCTCTCCC CACAGAGCTG CCCGATAAAT CCAGCAGTGT GATGCTCGAT GATCTCGTCA CGCAAATTAG ACCCGTCGCC ATCGATGGCT CCATAGATTA CACCACTCCC ACGACTTCTT CCTCCAGTGC GCCGTCTGCG TCGACGAAGG TGAAGAAGAA GCGAGGCAGA AAAGTCGCCG CCTCGAGGAG CATCGAGCAT CTGCCGCAGC AGCCGAGCAT GGACATTAAT CAGAATCAAA ATCAGAATGC CTCGGGAAGG TTTAGTCCTG CAGAGTCGCC GCCCGCGAGA GCTGCCACGG CTGGAGAGGT GACGGGCAAG CGCAGACTGA ATTTGGTTTC TCGAATCGCT CTCCGGAGAA AGCGGCAGGA GCTGTCGAAG AAGGATTTGG ATGCGAATGT GAAGATTAGC AAAGACGGGC ACGACATTTG GTCGGAGGAT GCCGAGAAGC TCATCACCAA GTACGCCTCG TCGCTCGATT TCGGTGTCGT CGATTGGGAC AGTCTGAGCC GCGACCTGCT CTCGGCCGAA GAAGAATACT CGCTCGCCAG CCTCATGAAG CCCGCCAAGA AATTAGAAAA GACTTTCAAA GCCATCGGCG AAGAGCTCGG CCGCGATCCA TCCGACGAAG AATGGGCCAA AGCTGCGCAA TTGGACGTGC ACACCCTGAA GCGTCAGGTT CTGCTGGGCC GAGCTGCGAG AAATAAACTG ATTCAGCACA ACCTGCGTCT CGTGCTCTTC CAAGCGCACA AGTATCAGAA GGATAATTCG AGCTTATCGC TCTTCGACCT CTGCCAAGAA GGAGTGTCGG GCTTGCTGCA CGGGGTGGAC AAATTCGACC CCAAGAGAGG GCACAGGTTC TCCACTTACG CTGTCTACTG GGTGCGCAAC TCCATTCTCA GGGCGATGAC GAGATCCGGA AGCGTGCTCC GCTCACCGTA CAATGTTGCC ATGCACAAGT GGAACATCAA GAGGGCGAGG CTCGATCTGC TGGTGGAGCT CGAGAGAGCA GCCACTGACG CAGAGGTGAT GGAGCGATTG GGCATCGCGC CGGATCGGTT TCGCGACATC GTTCGCTCGA GCACGCGCGC CAGATCCATT CACCAGCGCT CGCTGCTGAC CGGAGAAGAA TTCGTGGAGA ATATCGTCGA CTCGCAGAAC CGCGACGGGC ACAGCGCTGC AGCAGATACC GCTCTTCTGT CAATCGATGA TGTTCTCGAC TCATTGAAGC CCAAGGAGAG TTTTGTGTTG AGCCAGAGGT TTGGGCTGGA CGGGAAGGGC GAGCGAACTT TGAGCGAAAT AGGAAAGAAC ATGAATTTGT CGAGGGAAAT GGTGCGGCGC TACGAGGCCT GCGGCTTGTT GAAAATGAAG CACCCCACGC GCCTGGACTA TCTGCGCAAC TACCTCGCGA CTGAGACCTG A |
Protein |
| >Mapoly0007s0213.1 MERVGRIHPS GAGAVLVNGC CCGGPASSSS STKLGAGSES SRAITRLPIS LSTIVIDRLP RAGLRVGRLK RRSSSLTRFS VVAAAAAAAA AASVDTAYAP ERLVDDAKRS RKPRRRKDAL ANAESNATVP ISAATTKNLA STDKELLRLA RALENAYFQD SPLPSLPTEL PDKSSSVMLD DLVTQIRPVA IDGSIDYTTP TTSSSSAPSA STKVKKKRGR KVAASRSIEH LPQQPSMDIN QNQNQNASGR FSPAESPPAR AATAGEVTGK RRLNLVSRIA LRRKRQELSK KDLDANVKIS KDGHDIWSED AEKLITKYAS SLDFGVVDWD SLSRDLLSAE EEYSLASLMK PAKKLEKTFK AIGEELGRDP SDEEWAKAAQ LDVHTLKRQV LLGRAARNKL IQHNLRLVLF QAHKYQKDNS SLSLFDLCQE GVSGLLHGVD KFDPKRGHRF STYAVYWVRN SILRAMTRSG SVLRSPYNVA MHKWNIKRAR LDLLVELERA ATDAEVMERL GIAPDRFRDI VRSSTRARSI HQRSLLTGEE FVENIVDSQN RDGHSAAADT ALLSIDDVLD SLKPKESFVL SQRFGLDGKG ERTLSEIGKN MNLSREMVRR YEACGLLKMK HPTRLDYLRN YLATET |