U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Database | ID | Description |
---|---|---|
GO | GO:0003723 | RNA binding |
KOG | KOG2202 | U2 snRNP splicing factor, small subunit, and related proteins |
PFAM | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
PANTHER | PTHR12620 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT |
GO | GO:0005634 | nucleus |
PANTHER | PTHR12620:SF4 | |
PFAM | PF13893 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
GO | GO:0046872 | metal ion binding |
No gene symbols are registered for this gene.
Sequences: |
Gene UTR + CDS + intron |
>Mapoly0079s0042.1 TCTTTTGCGT GTATGTTCTC TTCCCGATTG GCTCCTCAGC ATAGTCACAT TCTCTGACTG CAATGGCTGC AATGGCTTGC TATTATGATA AACCGGTTGC GTCGCGCACG CTGCGACCTG AGAGATTCCA ACATTCTGCT GCGCTCAGTG CCCCAATTGG TTCTCTTCAA TTTACATGTA GGACGCGGTA ACCCCGTCTT TGAACAATTG TTGGAACATT GACGATGAAA TGCGACAATG ATCTACGAAA TTATGTCAGG GCGTCCCTGT CAGCGAGGTC TTATTTGTTG CTGCAAGTGC ACAGCATGTT GCCTTGCTCA GTTATTCCAG CTTTGAAGAT GTAAAGTCAC ACTGCCTTTT GCAGTTGTTG TGTCATGTAC TTTCGGGAAC CAACATAGGC GAGGTTCGAA TTTAATTCGA ATGCCGTTCT TGTGATTTGT TTCGTGAGTT TTTTCTGGCA AGAAATGGAA GACGTTTCTG TACACAAGCG TGAGAAAGTT GGAAGCGGCG CTGATGGAAT GCGTTCAGAA GAACCGAATT TTCCTACAGA TGGGGGAGAT TTGATCAATG AGTCACAAAC ATCAATTTCC GAACCTCTAT CCAAACCTTT TGAGTCACTG AGTCGGAAGG AGAAACGAAA AACCCTGAAA AAATTACGGA GGAAACAGGT CAGGCAAGAA GCTGCTGAAA AGGAGCACTT AGAAGAATTA GCTCGTTTAC AAGACGCCGC GGAGCAATTG AGAATTCAGG AGCAAGAGAA ACTTGATGCA GAACGAGTGG AGAAAGAAAG GGTTCAACAC GACGAGGAAG AAAGATTGTT TCACGAGCGG GAGAAGAAAG CTCAAGAGGA ATTTGAACGG AAACAAGCAG AGCGTTTGAA AAAGGTTCGT GTCTTAGGTT TGATGCCCCA GGTAGTAGTG TTGAAGACAT TTTATGTCAG TGTTAGGAAT AAGGTTCCTA GCGTGCCCGG ATAAGGTAGG AAGGCCCTTC GTCCAAGCAG TCTCTCCCAA ATTTTTTTCC AATGGTTACA ACTGAGAAGA AACTTACGAC TTGTTAGCTC GATGTCGCGA GTGAGTGCCG CAAAGAATCT GATTTTTTTA AATTTAATGG AGGGCTGCAG GAGGAGGAGT TGAGGCTACA CCAGGAAGAT GAGGAAAAGT GGAGATATGT GGAAGATGAT GGACCTGCAG AAATTATATG GCAGGGAAAT GAAATTATTG TCAGGAAGAA GCGAGTTAAG GTGCCTGTGG AGCAGGCTGA ACAACTTTTG CTTAAGGTAA GTAGCCTCAA AGGATTTTAC CATTACGGTG ATGATAATTG TTAACGGCGG GGTCGACAAG CTGATCAGGG TTTCGGTGCA CAGCTTTTAC ATCCTTCCGT CTGTAAATCT CACCATCCGT TCCATCTTCT GTACTGCCAC AGACTGCTGA GAACGCATCA TCGAATCCAT TGCCCCCACA GAGTACAGCA TTTGCAGCAC AGAAGTTACC CCCGCCTTCA ACGCCTGATG TGAGCGAACC AAATCCTATG TTCGGTACTG AACAGGTGGG TCAGTTACCA TATCTTTTCT GTTCGGTCAG TTAACGGGGA AAATTGCATC GATGACTTAC AGCCTGGGGT GATTTACGCA TGACCTTATC GTAGTCTGAA TTCTCCAGCA TTCTGTCCGC TTGATTTTGC AGGACAAGAC TCACTGTCCA TTTCACATCA AGACAGGAGT TTGCAGATTT GGGGTCCGTT GCAGTAGAGT ACATGTGTAT CCAGACCAAT CTTTTACTCT GCTTATGAGG AATATGTACA CTGGTCCTGG TCTCAGTTGG GATCATGACG AGGGGCTAGA GGTTTGTACC GTGCATACTC TGATACACTT CTTTATATTT TACTCCTGGA AGAGAGCCAT CACTCACTGT CAAGATCCGA ACAGCCTGAG TATCTGCTGC AAATCAGCTG AAGGAATGCT TGGTTAGTGT TCAACGAGAT CCATGAAAAT ATTCCGATAT TCTGCGGAAA GTTTCCACGT CTGTTATCCA TCTAACTGTA GCTTTGACGA CGTGTTCCAA TATTTGGCTG CCAAAGTTCG TCCAGACTCT ATGTTTGAAA AAGATCATTC AGAGTCTCGC TATTGCAAGC TCTTTCAAGG AAGGTGGGAA GCTTCTTTGG CGTCCGCACG AAGGGAAAGG AATCAGCGCT TATGTATCCT GCTAATCGGT TTTGGGTTTC ACATTTTTTC CGTTTAAGCC TGAAAAGAGA AACTTGATTC TACGTAGGTC TTTACTTCGT CTGTGAGATC TATGAAATTG GTCAATTTGC ATCGCTGGCA CTTGATCTCT TTTTTTCCGA CGATGAGGGA GGACGTCTCA CAGCGCGTTG AGATATACGC TCAGTACTGC TTTGATCTCT TGAATTGCAT TAGCATGCCT ATCGGGATGT CGTTCCAAGG AGTAGCAAGT CATCGGTCTT GGTCATTTGC CATTTGTAGC GAACAGCATG TTTCTGCATA CCTGCATAGT AGCAGTCGGT TATCCTTGAC AAGTTCGTGT AGGATATGGC CTGTCTTCAT TGCGGAGAAG TTCCACCTTT TGCCTTGGTG TAAGGCTACA ATGGCCATTA CATGGTTTGT GTGGCTGCTG AATGCATGAC AGCATAGTGA CGAGGAGGTT GCCGAACAGT TTGAGGAATT CTATGAAGAT GTACACTCTG AATTTCTTCA GTATGGGGAA TTGGTTAACT TCAAGGTACG GTTTCCATTC TGGTCAGAAG AAATACCTCT TGACTTTTTG CTGCACCGTT ATCTATTGTT ATCTCCCAGC CATGATCCAC GTCAGGCAAT GTTTCTCAAT TATTTTTTCA GGTTTGCAAG AATGGATCAT CACATCTGCG GGGGAATGTA TATGTTCACT ACCAAACAGA GGCTGGTGCT CAAGCTGCTT ACAATGCAAT GAACGGTCGC TTTTATGCTG GAAAGCAGGT CAGTAAAAGT GTTGGCATGT GTCGTATGAC GCTATGTATC CCATTTGGGT CACACTTCTA GTATACTAGT TCGGAGTCTG CGACGGGTAA GTTTCGATAT ATAGTTCACA AGGCGATAAC AATCAAAACA CTTCGCTGTC TGCCTGCTGC TATTCCCGAG ATTGATCAAT TAGTCAACTG AATCGTTGGG AGATGCGTTG GATGATTCTC ACAAGCGATG CAGTTTAAGG TGCTCATAAC CCGGTTTATT TGTCAGAGGT TATATATTGA TTATTTGCTC TCTTCCCTCT CTGCTTGAGA AGTTTCTGTG ATTGGTGAAT GGTGGGGGAG ATGTATCGAA TCTGGATGTA GAAGAAATAT AGTTCATGAT ATTGATGCAG AAACATGGGA GTTCGTTGTT TCAATTCACT GTTCTTTTAT ATCATCAATG GTTTGGCTTT GACTATCAGA TAACCTGCGA GTTTGTGGGA GTAACAAGAT GGAGGGTTGC TCTATGCGGG GAGTACATGA AAGGACACCA CAAGGTACTG GGCTTATGCA CGTTAAAACC TTGTTCGATG TTACAAACTC TACAGTAGTT ATGAGTGTGA GAGATTACAA GGCCTGAATT CCACCTGTCA CTTTTAGATG CCAATTTTGA GTTGAATCAA TCATGCGTAT GTTTTCTGAA AGGGCTAATT AGGATCAGTT GTGAAGTACG AACTTCTCCG CTTTACGTCG ACTCGAATCT GATCGTCCTT TTCCTGTGAC AGCCGTGCTC ACATGGAACA GCATGCAACT TTCTTCACTG TTTTCGTAAT CCTAGAGGGG AGTATGATTG GGCTGATTGG GATAGCCCTC CTCCCCGCTA TTGGGCAGCA AAGATGGCGA AGCTTTTTGG CTACGAACTG GATTACAGGG AAGACGATGA TAGACCAAGC TATCATGATG ATTCTCAAAG ACGTTACAGG TCCCACGAGA GGGCTCGAAG CACGGATGGA CGACACAGGA GCGAAGATAG ACAGTCTAGA TTTGATGATC ATGAGCATGT TTCAAGGCAT CGAGAGCGCA GGTGGCACAG GAATCATGAT AAGAGTAACC TATCAAGCTC TGATGATATC GAGAGGTCTT CTAGGAGCAA GAGGCGCGAT CGAAGGCATC ATCGATCCAG TCCTGACTCG ACTGGTAAAA GGAGTAGGAG GCAAAGTTCT GGAGAGAAAG ACGAAAATGG TAAAAGATAC CACCAGGAAA GTAGGCAGAG TCTTGAAACC GGTCAAGACG AAGCGGTAAC GAGGGCCGTT GATGGAGTGG AAAATATCGA TAGCGATAGG AAATACGGAA GAGATCATGA TGTGGATGAC AATAACGCTG ATGAACTCCA ACACCGGAAC AGAAGGAGAA TAGAGCGATA TGGAACTCCT CAAATTCATA CTACATATGA AAATAGATCT TCAACCAGAA GTTGTACAAG AGACCTACAT ATACATGACT ACCCGTCGTC TAACCATTAC AAGATTAGGA CATGCAGAAA TAACAGTGAT TCTTTGGAGG ACGATCAGAC TGGCCAACAT GTCCAGGAAG CCCAAGACAG AACAGAGGGA AGAAATCGAA AACGAGAGCG TGGAGAGAGA GAGCGATATA AGACACGAGA AGTTAGCAAG AGCAAGAGAG GCAGGAGGAA GGATGCTGAA AGCGAATCCA GTGACGATGG ATCGTATAGG GTCTTAAAGA CATCTAGAAG CGAGCGGAAG CAAGACAGCA GAAGGAGTCT ATACAGAGAA AAGCATAGGG ATGCGCTTGT AGGTGAGTAT ATCGAACAAG AGGACAGATG GAGTCTCGAT GTTGATACGC AATAATGGAG TCAAAGTTTT TCGCTGGGTG AACGCATCGA AGACAGTCTA ACCTGTTCAA TTTATTTTAA TAAAACTTTG TGCAAATCTC AAGTCCA |
mRNA UTR + CDS |
>Mapoly0079s0042.1 TCTTTTGCGT GTATGTTCTC TTCCCGATTG GCTCCTCAGC ATAGTCACAT TCTCTGACTG CAATGGCTGC AATGGCTTGC TATTATGATA AACCGGTTGC GTCGCGCACG CTGCGACCTG AGAGATTCCA ACATTCTGCT GCGCTCAGTG CCCCAATTGG TTCTCTTCAA TTTACATGTA GGACGCGGTA ACCCCGTCTT TGAACAATTG TTGGAACATT GACGATGAAA TGCGACAATG ATCTACGAAA TTATGTCAGG GCGTCCCTGT CAGCGAGGTC TTATTTGTTG CTGCAAGTGC ACAGCATGTT GCCTTGCTCA GTTATTCCAG CTTTGAAGAT GTAAAGTCAC ACTGCCTTTT GCAGTTGTTG TGTCATGTAC TTTCGGGAAC CAACATAGGC GAGGTTCGAA TTTAATTCGA ATGCCGTTCT TGTGATTTGT TTCGTGAGTT TTTTCTGGCA AGAAATGGAA GACGTTTCTG TACACAAGCG TGAGAAAGTT GGAAGCGGCG CTGATGGAAT GCGTTCAGAA GAACCGAATT TTCCTACAGA TGGGGGAGAT TTGATCAATG AGTCACAAAC ATCAATTTCC GAACCTCTAT CCAAACCTTT TGAGTCACTG AGTCGGAAGG AGAAACGAAA AACCCTGAAA AAATTACGGA GGAAACAGGT CAGGCAAGAA GCTGCTGAAA AGGAGCACTT AGAAGAATTA GCTCGTTTAC AAGACGCCGC GGAGCAATTG AGAATTCAGG AGCAAGAGAA ACTTGATGCA GAACGAGTGG AGAAAGAAAG GGTTCAACAC GACGAGGAAG AAAGATTGTT TCACGAGCGG GAGAAGAAAG CTCAAGAGGA ATTTGAACGG AAACAAGCAG AGCGTTTGAA AAAGGAGGAG GAGTTGAGGC TACACCAGGA AGATGAGGAA AAGTGGAGAT ATGTGGAAGA TGATGGACCT GCAGAAATTA TATGGCAGGG AAATGAAATT ATTGTCAGGA AGAAGCGAGT TAAGGTGCCT GTGGAGCAGG CTGAACAACT TTTGCTTAAG ACTGCTGAGA ACGCATCATC GAATCCATTG CCCCCACAGA GTACAGCATT TGCAGCACAG AAGTTACCCC CGCCTTCAAC GCCTGATGTG AGCGAACCAA ATCCTATGTT CGGTACTGAA CAGGACAAGA CTCACTGTCC ATTTCACATC AAGACAGGAG TTTGCAGATT TGGGGTCCGT TGCAGTAGAG TACATGTGTA TCCAGACCAA TCTTTTACTC TGCTTATGAG GAATATGTAC ACTGGTCCTG GTCTCAGTTG GGATCATGAC GAGGGGCTAG AGCATAGTGA CGAGGAGGTT GCCGAACAGT TTGAGGAATT CTATGAAGAT GTACACTCTG AATTTCTTCA GTATGGGGAA TTGGTTAACT TCAAGGTTTG CAAGAATGGA TCATCACATC TGCGGGGGAA TGTATATGTT CACTACCAAA CAGAGGCTGG TGCTCAAGCT GCTTACAATG CAATGAACGG TCGCTTTTAT GCTGGAAAGC AGATAACCTG CGAGTTTGTG GGAGTAACAA GATGGAGGGT TGCTCTATGC GGGGAGTACA TGAAAGGACA CCACAAGCCG TGCTCACATG GAACAGCATG CAACTTTCTT CACTGTTTTC GTAATCCTAG AGGGGAGTAT GATTGGGCTG ATTGGGATAG CCCTCCTCCC CGCTATTGGG CAGCAAAGAT GGCGAAGCTT TTTGGCTACG AACTGGATTA CAGGGAAGAC GATGATAGAC CAAGCTATCA TGATGATTCT CAAAGACGTT ACAGGTCCCA CGAGAGGGCT CGAAGCACGG ATGGACGACA CAGGAGCGAA GATAGACAGT CTAGATTTGA TGATCATGAG CATGTTTCAA GGCATCGAGA GCGCAGGTGG CACAGGAATC ATGATAAGAG TAACCTATCA AGCTCTGATG ATATCGAGAG GTCTTCTAGG AGCAAGAGGC GCGATCGAAG GCATCATCGA TCCAGTCCTG ACTCGACTGG TAAAAGGAGT AGGAGGCAAA GTTCTGGAGA GAAAGACGAA AATGGTAAAA GATACCACCA GGAAAGTAGG CAGAGTCTTG AAACCGGTCA AGACGAAGCG GTAACGAGGG CCGTTGATGG AGTGGAAAAT ATCGATAGCG ATAGGAAATA CGGAAGAGAT CATGATGTGG ATGACAATAA CGCTGATGAA CTCCAACACC GGAACAGAAG GAGAATAGAG CGATATGGAA CTCCTCAAAT TCATACTACA TATGAAAATA GATCTTCAAC CAGAAGTTGT ACAAGAGACC TACATATACA TGACTACCCG TCGTCTAACC ATTACAAGAT TAGGACATGC AGAAATAACA GTGATTCTTT GGAGGACGAT CAGACTGGCC AACATGTCCA GGAAGCCCAA GACAGAACAG AGGGAAGAAA TCGAAAACGA GAGCGTGGAG AGAGAGAGCG ATATAAGACA CGAGAAGTTA GCAAGAGCAA GAGAGGCAGG AGGAAGGATG CTGAAAGCGA ATCCAGTGAC GATGGATCGT ATAGGGTCTT AAAGACATCT AGAAGCGAGC GGAAGCAAGA CAGCAGAAGG AGTCTATACA GAGAAAAGCA TAGGGATGCG CTTGTAGGTG AGTATATCGA ACAAGAGGAC AGATGGAGTC TCGATGTTGA TACGCAATAA TGGAGTCAAA GTTTTTCGCT GGGTGAACGC ATCGAAGACA GTCTAACCTG TTCAATTTAT TTTAATAAAA CTTTGTGCAA ATCTCAAGTC CA |
CDS |
>Mapoly0079s0042.1 ATGGAAGACG TTTCTGTACA CAAGCGTGAG AAAGTTGGAA GCGGCGCTGA TGGAATGCGT TCAGAAGAAC CGAATTTTCC TACAGATGGG GGAGATTTGA TCAATGAGTC ACAAACATCA ATTTCCGAAC CTCTATCCAA ACCTTTTGAG TCACTGAGTC GGAAGGAGAA ACGAAAAACC CTGAAAAAAT TACGGAGGAA ACAGGTCAGG CAAGAAGCTG CTGAAAAGGA GCACTTAGAA GAATTAGCTC GTTTACAAGA CGCCGCGGAG CAATTGAGAA TTCAGGAGCA AGAGAAACTT GATGCAGAAC GAGTGGAGAA AGAAAGGGTT CAACACGACG AGGAAGAAAG ATTGTTTCAC GAGCGGGAGA AGAAAGCTCA AGAGGAATTT GAACGGAAAC AAGCAGAGCG TTTGAAAAAG GAGGAGGAGT TGAGGCTACA CCAGGAAGAT GAGGAAAAGT GGAGATATGT GGAAGATGAT GGACCTGCAG AAATTATATG GCAGGGAAAT GAAATTATTG TCAGGAAGAA GCGAGTTAAG GTGCCTGTGG AGCAGGCTGA ACAACTTTTG CTTAAGACTG CTGAGAACGC ATCATCGAAT CCATTGCCCC CACAGAGTAC AGCATTTGCA GCACAGAAGT TACCCCCGCC TTCAACGCCT GATGTGAGCG AACCAAATCC TATGTTCGGT ACTGAACAGG ACAAGACTCA CTGTCCATTT CACATCAAGA CAGGAGTTTG CAGATTTGGG GTCCGTTGCA GTAGAGTACA TGTGTATCCA GACCAATCTT TTACTCTGCT TATGAGGAAT ATGTACACTG GTCCTGGTCT CAGTTGGGAT CATGACGAGG GGCTAGAGCA TAGTGACGAG GAGGTTGCCG AACAGTTTGA GGAATTCTAT GAAGATGTAC ACTCTGAATT TCTTCAGTAT GGGGAATTGG TTAACTTCAA GGTTTGCAAG AATGGATCAT CACATCTGCG GGGGAATGTA TATGTTCACT ACCAAACAGA GGCTGGTGCT CAAGCTGCTT ACAATGCAAT GAACGGTCGC TTTTATGCTG GAAAGCAGAT AACCTGCGAG TTTGTGGGAG TAACAAGATG GAGGGTTGCT CTATGCGGGG AGTACATGAA AGGACACCAC AAGCCGTGCT CACATGGAAC AGCATGCAAC TTTCTTCACT GTTTTCGTAA TCCTAGAGGG GAGTATGATT GGGCTGATTG GGATAGCCCT CCTCCCCGCT ATTGGGCAGC AAAGATGGCG AAGCTTTTTG GCTACGAACT GGATTACAGG GAAGACGATG ATAGACCAAG CTATCATGAT GATTCTCAAA GACGTTACAG GTCCCACGAG AGGGCTCGAA GCACGGATGG ACGACACAGG AGCGAAGATA GACAGTCTAG ATTTGATGAT CATGAGCATG TTTCAAGGCA TCGAGAGCGC AGGTGGCACA GGAATCATGA TAAGAGTAAC CTATCAAGCT CTGATGATAT CGAGAGGTCT TCTAGGAGCA AGAGGCGCGA TCGAAGGCAT CATCGATCCA GTCCTGACTC GACTGGTAAA AGGAGTAGGA GGCAAAGTTC TGGAGAGAAA GACGAAAATG GTAAAAGATA CCACCAGGAA AGTAGGCAGA GTCTTGAAAC CGGTCAAGAC GAAGCGGTAA CGAGGGCCGT TGATGGAGTG GAAAATATCG ATAGCGATAG GAAATACGGA AGAGATCATG ATGTGGATGA CAATAACGCT GATGAACTCC AACACCGGAA CAGAAGGAGA ATAGAGCGAT ATGGAACTCC TCAAATTCAT ACTACATATG AAAATAGATC TTCAACCAGA AGTTGTACAA GAGACCTACA TATACATGAC TACCCGTCGT CTAACCATTA CAAGATTAGG ACATGCAGAA ATAACAGTGA TTCTTTGGAG GACGATCAGA CTGGCCAACA TGTCCAGGAA GCCCAAGACA GAACAGAGGG AAGAAATCGA AAACGAGAGC GTGGAGAGAG AGAGCGATAT AAGACACGAG AAGTTAGCAA GAGCAAGAGA GGCAGGAGGA AGGATGCTGA AAGCGAATCC AGTGACGATG GATCGTATAG GGTCTTAAAG ACATCTAGAA GCGAGCGGAA GCAAGACAGC AGAAGGAGTC TATACAGAGA AAAGCATAGG GATGCGCTTG TAGGTGAGTA TATCGAACAA GAGGACAGAT GGAGTCTCGA TGTTGATACG CAATAA |
Protein |
>Mapoly0079s0042.1 MEDVSVHKRE KVGSGADGMR SEEPNFPTDG GDLINESQTS ISEPLSKPFE SLSRKEKRKT LKKLRRKQVR QEAAEKEHLE ELARLQDAAE QLRIQEQEKL DAERVEKERV QHDEEERLFH EREKKAQEEF ERKQAERLKK EEELRLHQED EEKWRYVEDD GPAEIIWQGN EIIVRKKRVK VPVEQAEQLL LKTAENASSN PLPPQSTAFA AQKLPPPSTP DVSEPNPMFG TEQDKTHCPF HIKTGVCRFG VRCSRVHVYP DQSFTLLMRN MYTGPGLSWD HDEGLEHSDE EVAEQFEEFY EDVHSEFLQY GELVNFKVCK NGSSHLRGNV YVHYQTEAGA QAAYNAMNGR FYAGKQITCE FVGVTRWRVA LCGEYMKGHH KPCSHGTACN FLHCFRNPRG EYDWADWDSP PPRYWAAKMA KLFGYELDYR EDDDRPSYHD DSQRRYRSHE RARSTDGRHR SEDRQSRFDD HEHVSRHRER RWHRNHDKSN LSSSDDIERS SRSKRRDRRH HRSSPDSTGK RSRRQSSGEK DENGKRYHQE SRQSLETGQD EAVTRAVDGV ENIDSDRKYG RDHDVDDNNA DELQHRNRRR IERYGTPQIH TTYENRSSTR SCTRDLHIHD YPSSNHYKIR TCRNNSDSLE DDQTGQHVQE AQDRTEGRNR KRERGERERY KTREVSKSKR GRRKDAESES SDDGSYRVLK TSRSERKQDS RRSLYREKHR DALVGEYIEQ EDRWSLDVDT Q |