Mp1g02820



Description

Annotation

Database ID Description
ProSiteProfiles PS51467 HARP domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:3.40.50.10810:FF:000044 Chromatin remodeling factor18
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
CDD cd18010 DEXHc_HARP_SMARCAL1
Gene3D G3DSA:3.40.50.300 -
SMART SM00487 ultradead3
FunFam G3DSA:3.40.50.300:FF:001501 Chromatin remodeling factor18
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00176 SNF2-related domain
PANTHER PTHR45766 DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
Gene3D G3DSA:3.40.50.10810 -
CDD cd18793 SF2_C_SNF
Coils Coil Coil
SMART SM00490 helicmild6
KEGG K14440 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
KOG KOG1000 Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily; [B]
MapolyID Mapoly0113s0030 -
GO GO:0043596 nuclear replication fork
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0006281 DNA repair
GO GO:0048478 obsolete replication fork protection
GO GO:0031297 replication fork processing

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g02820.1 chr1:3124463..3134466 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.