Mp1g02840



Description

Annotation

Database ID Description
Coils Coil Coil
Pfam PF00636 Ribonuclease III domain
SUPERFAMILY SSF69065 RNase III domain-like
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain
PANTHER PTHR14950 DICER-RELATED
CDD cd00593 RIBOc
Pfam PF03368 Dicer dimerisation domain
SMART SM00535 riboneu5
Gene3D G3DSA:2.170.260.10 paz domain
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
FunFam G3DSA:3.40.50.300:FF:000705 Endoribonuclease dicer-like protein
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS50821 PAZ domain profile.
SMART SM00490 helicmild6
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
FunFam G3DSA:3.30.160.380:FF:000001 Endoribonuclease dicer-like 1
Gene3D G3DSA:3.30.160.380 Dicer dimerisation domain
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.10.1520.10:FF:000004 Endoribonuclease dicer-like 1
SMART SM00949 PAZ_2_a_3
FunFam G3DSA:3.40.50.300:FF:000420 Endoribonuclease dicer-like 1
Pfam PF00035 Double-stranded RNA binding motif
Pfam PF02170 PAZ domain
CDD cd18034 DEXHc_dicer
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00270 DEAD/DEAH box helicase
Gene3D G3DSA:3.30.160.20 -
SMART SM00358 DRBM_3
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF101690 PAZ domain
SUPERFAMILY SSF54768 dsRNA-binding domain-like
SMART SM00487 ultradead3
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
ProSitePatterns PS00517 Ribonuclease III family signature.
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
MapolyID Mapoly0113s0032 -
GO GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0005524 ATP binding
GO GO:0006396 RNA processing
GO GO:0030422 siRNA processing
GO GO:0005515 protein binding
GO GO:0004525 ribonuclease III activity
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL1a miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g02840.1 chr1:3158070..3167928 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.