Mp1g05250



Description

Annotation

Database ID Description
FunFam G3DSA:1.25.10.10:FF:000071 Coatomer subunit gamma
FunFam G3DSA:1.25.10.10:FF:000078 Coatomer subunit gamma
FunFam G3DSA:2.60.40.1480:FF:000002 Coatomer subunit gamma
FunFam G3DSA:3.30.310.10:FF:000011 Coatomer subunit gamma
Gene3D G3DSA:1.25.10.10 -
Gene3D G3DSA:2.60.40.1480 Coatomer, gamma subunit, appendage domain
Gene3D G3DSA:3.30.310.10 -
KEGG K17267 coatomer subunit gamma
KOG KOG1078 Vesicle coat complex COPI, gamma subunit; [U]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR10261 COATOMER SUBUNIT GAMMA
PIRSF PIRSF037093 Gamma-COP
Pfam PF01602 Adaptin N terminal region
Pfam PF08752 Coatomer gamma subunit appendage platform subdomain
Pfam PF16381 Coatomer subunit gamma-1 C-terminal appendage platform
SUPERFAMILY SSF48371 ARM repeat
SUPERFAMILY SSF49348 Clathrin adaptor appendage domain
SUPERFAMILY SSF55711 Subdomain of clathrin and coatomer appendage domain
GO GO:0016192 vesicle-mediated transport
GO GO:0006891 intra-Golgi vesicle-mediated transport
GO GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
GO GO:0005198 structural molecule activity
GO GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO GO:0006886 intracellular protein transport
GO GO:0000139 Golgi membrane
GO GO:0030117 membrane coat
GO GO:0005783 endoplasmic reticulum
GO GO:0009306 protein secretion
GO GO:0030126 COPI vesicle coat
MapolyID Mapoly0005s0083 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSEC21 Coatomer gamma subunit (COPI; SEC21) Published
Locus assigned by MarpolBase literature-mining curation (2026-10): Supplementary table of PMC9420845; the locus is annotated as the coatomer gamma subunit (COPI).

Associated Literature (AI-based literature mining)

Coatomer gamma subunit (COPI; SEC21); Gamma COPI subunit; tested by beta-estradiol-inducible knockdown with qRT-PCR-confirmed reduced mRNA. Knockdown produced abnormally shaped oil bodies and severely impaired growth (more severe than loss of MpSEC28), supporting a COPI role in oil body morphogenesis. (from nomenclature)

1 core 0 peripheral

Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental subject
Gamma COPI subunit; tested by beta-estradiol-inducible knockdown with qRT-PCR-confirmed reduced mRNA. Knockdown produced abnormally shaped oil bodies and severely impaired growth (more severe than loss of MpSEC28), supporting a COPI role in oil body morphogenesis.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05250.1 chr1:5632791..5640357 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g05250 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g05250 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.