Mp1g05480



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
SMART SM00487 ultradead3
Gene3D G3DSA:2.40.50.40 -
SMART SM00490 helicmild6
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
CDD cd18659 CD2_tandem
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SUPERFAMILY SSF54160 Chromo domain-like
SMART SM01176 DUF4208_2
Pfam PF13907 Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.10810 -
CDD cd18793 SF2_C_SNF
Coils Coil Coil
FunFam G3DSA:3.40.50.300:FF:000130 Chromodomain-helicase-DNA-binding protein 2 isoform 1
FunFam G3DSA:3.40.50.10810:FF:000005 Photoperiod-independent early flowering 1
Gene3D G3DSA:1.10.10.60 -
CDD cd18660 CD1_tandem
SMART SM00298 chromo_7
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG2600 U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p; C-term missing; [A]
MapolyID Mapoly0005s0060 -
GO GO:0034728 nucleosome organization
GO GO:0005634 nucleus
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.2 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05480.1 chr1:5918665..5934682 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05480.2 chr1:5918665..5934682 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.