Mp1g05480



Description

Annotation

Database ID Description
KEGG K11367 chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG2600 U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p; C-term missing; [A]
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00487 ultradead3
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Coils Coil Coil
SUPERFAMILY SSF54160 Chromo domain-like
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF13907 Domain of unknown function (DUF4208)
PANTHER PTHR45623:SF14 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1
Pfam PF00176 SNF2 family N-terminal domain
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
CDD cd18793 SF2_C_SNF
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00298 chromo_7
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Gene3D G3DSA:3.40.50.300 -
Gene3D G3DSA:3.40.50.10810 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
CDD cd18659 CD2_tandem
Gene3D G3DSA:2.40.50.40 -
CDD cd18660 CD1_tandem
Gene3D G3DSA:1.10.10.60 -
SMART SM00490 helicmild6
SMART SM01176 DUF4208_2
MapolyID Mapoly0005s0060 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.2 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05480.1 chr1:5843584..5859601 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05480.2 chr1:5843584..5859601 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.