Mp1g06750



Description

Annotation

Database ID Description
Pfam PF00270 DEAD/DEAH box helicase
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Gene3D G3DSA:3.40.50.300 -
CDD cd22475 KH-I_AtRH42_like
Pfam PF00271 Helicase conserved C-terminal domain
PANTHER PTHR24031 RNA HELICASE
CDD cd17953 DEADc_DDX46
SMART SM00487 ultradead3
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature.
FunFam G3DSA:3.40.50.300:FF:000008 ATP-dependent RNA helicase RhlB
Coils Coil Coil
CDD cd18787 SF2_C_DEAD
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
FunFam G3DSA:3.40.50.300:FF:000079 probable ATP-dependent RNA helicase DDX17
SMART SM00490 helicmild6
KEGG K12811 ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13]
KOG KOG0334 RNA helicase; [A]
KOG KOG4676 Splicing factor, arginine/serine-rich; N-term missing; C-term missing; [A]
MapolyID Mapoly0043s0067 -
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0003724 RNA helicase activity
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpRH42 ATP-dependent RNA helicase Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g06750.1 chr1:7301655..7308354 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g06750.2 chr1:7301655..7308052 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.