Mp1g08410



Description

Annotation

Database ID Description
Gene3D G3DSA:3.40.50.10810 -
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF00176 SNF2-related domain
SMART SM00490 helicmild6
Coils Coil Coil
CDD cd22254 CSB_WHD
SMART SM00487 ultradead3
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR45629 SNF2/RAD54 FAMILY MEMBER
Gene3D G3DSA:3.40.50.300 -
CDD cd18793 SF2_C_SNF
CDD cd18000 DEXHc_ERCC6
FunFam G3DSA:3.40.50.10810:FF:000034 Protein CHROMATIN REMODELING 8
KEGG K10841 DNA excision repair protein ERCC-6
KOG KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [KL]
KOG KOG0956 PHD finger protein AF10; N-term missing; [R]
MapolyID Mapoly0036s0084 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0006283 transcription-coupled nucleotide-excision repair

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.5 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g08410.1 chr1:8911121..8917888 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.