Mp1g10300



Description

Annotation

Database ID Description
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
SMART SM00356 c3hfinal6
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Gene3D G3DSA:4.10.1000.10 -
PANTHER PTHR12272 DEADENYLATION COMPLEX SUBUNIT PAN3
Coils Coil Coil
Gene3D G3DSA:1.10.287.3700 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like)
Gene3D G3DSA:6.10.250.3160 -
SUPERFAMILY SSF90229 CCCH zinc finger
Gene3D G3DSA:1.20.5.5160 -
FunFam G3DSA:1.10.287.3700:FF:000001 PAN2-PAN3 deadenylation complex subunit PAN3
Pfam PF18101 Pan3 Pseudokinase domain
KEGG K12572 PAB-dependent poly(A)-specific ribonuclease subunit 3
KOG KOG3741 Poly(A) ribonuclease subunit; N-term missing; [A]
KOG KOG1677 CCCH-type Zn-finger protein; N-term missing; C-term missing; [R]
MapolyID Mapoly0014s0196 -
GO GO:0003723 RNA binding
GO GO:0031251 PAN complex
GO GO:0046872 metal ion binding
GO GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening
GO GO:0000932 P-body
GO GO:0008143 poly(A) binding
GO GO:0006397 mRNA processing

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H6 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g10300.1 chr1:10921056..10933505 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g10300.2 chr1:10921056..10933505 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.