Mp1g17010



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR10799 SNF2/RAD54 HELICASE FAMILY
SUPERFAMILY SSF47370 Bromodomain
Gene3D G3DSA:3.40.50.300 -
SMART SM00951 QLQ_2
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF00439 Bromodomain
Gene3D G3DSA:1.20.5.170 -
ProSiteProfiles PS51666 QLQ domain profile.
Coils Coil Coil
CDD cd18793 SF2_C_SNF
SMART SM00490 helicmild6
SMART SM00487 ultradead3
FunFam G3DSA:3.40.50.10810:FF:000017 ATP-dependent helicase BRM
PRINTS PR00503 Bromodomain signature
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:1.20.920.10 -
Gene3D G3DSA:3.40.50.10810 -
SMART SM00297 bromo_6
ProSiteProfiles PS50014 Bromodomain profile.
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
KOG KOG0386 Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [BK]
KOG KOG1474 Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins; N-term missing; C-term missing; [K]
KOG KOG2341 TATA box binding protein (TBP)-associated factor, RNA polymerase II; C-term missing; [K]
KOG KOG4701 Chitinase; N-term missing; [M]
MapolyID Mapoly0001s0041 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0005515 protein binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0003677 DNA binding
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0045944 positive regulation of transcription by RNA polymerase II

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.7 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g17010.1 chr1:17791512..17807704 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g17010.2 chr1:17791444..17807704 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.