Mp1g18560



Description

Annotation

Database ID Description
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00490 helicmild6
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Gene3D G3DSA:3.40.50.300 -
Gene3D G3DSA:2.40.50.40 -
SMART SM00487 ultradead3
SUPERFAMILY SSF54160 Chromo domain-like
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
CDD cd18659 CD2_tandem
SMART SM00298 chromo_7
Pfam PF00271 Helicase conserved C-terminal domain
CDD cd18793 SF2_C_SNF
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.10810 -
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG0732 AAA+-type ATPase containing the bromodomain; C-term missing; [O]
MapolyID Mapoly0001s0194 -
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.8 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g18560.1 chr1:19299659..19311920 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.