Mp1g21580



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18787 SF2_C_DEAD
FunFam G3DSA:3.40.50.300:FF:000322 probable ATP-dependent RNA helicase DDX23
Pfam PF00270 DEAD/DEAH box helicase
Pfam PF00271 Helicase conserved C-terminal domain
Coils Coil Coil
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile.
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
FunFam G3DSA:3.40.50.300:FF:000520 probable ATP-dependent RNA helicase DDX23
SMART SM00490 helicmild6
PANTHER PTHR47958 ATP-DEPENDENT RNA HELICASE DBP3
CDD cd17945 DEADc_DDX23
SMART SM00487 ultradead3
KEGG K12858 ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13]
KOG KOG0333 U5 snRNP-like RNA helicase subunit; [A]
KOG KOG0835 Cyclin L; N-term missing; [R]
MapolyID Mapoly0001s0493 -
GO GO:0003723 RNA binding
GO GO:0005524 ATP binding
GO GO:0003724 RNA helicase activity
GO GO:0071013 catalytic step 2 spliceosome
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSMA1 ATP-dependent RNA helicase; U5 snRNP-like RNA helicase Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21580.1 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21580.2 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21580.3 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21580.4 chr1:22571858..22581837 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.