Mp1g29090



Description

Annotation

Database ID Description
Coils Coil Coil
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd03275 ABC_SMC1_euk
Gene3D G3DSA:1.20.1060.20 -
Gene3D G3DSA:3.30.70.1620 -
PANTHER PTHR18937 STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Gene3D G3DSA:3.40.50.300 -
PIRSF PIRSF005719 SMC
FunFam G3DSA:3.40.50.300:FF:000564 Structural maintenance of chromosomes 1A
SUPERFAMILY SSF75553 Smc hinge domain
Pfam PF06470 SMC proteins Flexible Hinge Domain
Pfam PF02463 RecF/RecN/SMC N terminal domain
SMART SM00968 SMC_hinge_2
KEGG K06636 structural maintenance of chromosome 1
KOG KOG0018 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1); [D]
MapolyID Mapoly0107s0024 -
GO GO:0005634 nucleus
GO GO:0008278 cohesin complex
GO GO:0005524 ATP binding
GO GO:0051276 chromosome organization
GO GO:0005515 protein binding
GO GO:0016887 ATP hydrolysis activity
GO GO:0003677 DNA binding
GO GO:0005694 chromosome
GO GO:0007062 sister chromatid cohesion

Nomenclature

Gene symbol Product Transcript ID Status
MpSMC1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g29090.1 chr1:30494160..30506653 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.