Mp2g05860



Description

Annotation

Database ID Description
Gene3D G3DSA:3.40.50.300 -
SMART SM00487 ultradead3
Pfam PF00176 SNF2-related domain
Pfam PF21325 E3 ubiquitin-protein ligase SHPRH, first helical domain
CDD cd18793 SF2_C_SNF
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50089 Zinc finger RING-type profile.
PANTHER PTHR45865 E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER
Pfam PF21324 E3 ubiquitin-protein ligase SHPRH, second helical domain
Coils Coil Coil
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
CDD cd18070 DEXQc_SHPRH
SUPERFAMILY SSF57850 RING/U-box
SMART SM00490 helicmild6
Gene3D G3DSA:3.40.50.10810 -
Pfam PF00271 Helicase conserved C-terminal domain
KEGG K15710 E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.- 2.3.2.27]
KOG KOG0298 DEAD box-containing helicase-like transcription factor/DNA repair protein; N-term missing; [L]
MapolyID Mapoly0021s0042 -
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0005524 ATP binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.10 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g05860.1 chr2:6615641..6627370 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g05860.2 chr2:6617906..6627616 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.