Mp2g14140



Description

Annotation

Database ID Description
FunFam G3DSA:1.20.58.70:FF:000010 Syntaxin-43
Pfam PF05739 SNARE domain
SMART SM00503 SynN_4
CDD cd15845 SNARE_syntaxin16
ProSitePatterns PS00914 Syntaxin / epimorphin family signature.
Gene3D G3DSA:1.20.58.70 -
SMART SM00397 tSNARE_6
PANTHER PTHR19957 SYNTAXIN
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF47661 t-snare proteins
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
KEGG K08489 syntaxin 16
KOG KOG0809 SNARE protein TLG2/Syntaxin 16; [U]
MapolyID Mapoly0042s0041 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP4 Ortholog of Arabidopsis SYP4 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SYP4 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSYP4 driven by the cauliflower mosaic virus 35S promoter is localized to the trans-Golgi network. (from nomenclature)

0 core 4 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Wachananawat, B., et al. (2020) · Frontiers in Plant Science  research experimental tool
Trans-Golgi network marker (pro35S:MpSYP4-Citrine) co-transformed with MpRRT1-tagRFP as a localization reference; not characterized itself.
Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental tool
Trans-Golgi network marker (mCitrine-MpSYP4); low Pearson colocalization with MpSEC28-mCherry indicated MpSEC28 is not at the TGN.
Kanazawa, T., et al. (2020) · Nature Communications  research experimental tool
TGN SNARE marker; compartment control.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g14140.1 chr2:15792997..15798551 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g14140.2 chr2:15792997..15798551 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g14140 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g14140 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.