Mp2g25720



Description

Annotation

Database ID Description
KEGG K11292 transcription elongation factor SPT6
KOG KOG1856 Transcription elongation factor SPT6; [A]
KOG KOG2992 Nucleolar GTPase/ATPase p130; C-term missing; [Y]
KOG KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins; N-term missing; [A]
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50126 S1 domain profile.
SUPERFAMILY SSF55550 SH2 domain
Pfam PF14635 Helix-hairpin-helix motif
PANTHER PTHR10145 TRANSCRIPTION ELONGATION FACTOR SPT6
SMART SM00732 rnase_8s
SUPERFAMILY SSF47781 RuvA domain 2-like
Pfam PF14639 Holliday-junction resolvase-like of SPT6
SMART SM00316 S1_6
Gene3D G3DSA:1.10.150.850 -
Pfam PF14633 SH2 domain
Gene3D G3DSA:3.30.420.140 -
Gene3D G3DSA:1.10.10.2740 -
SUPERFAMILY SSF158832 Tex N-terminal region-like
Pfam PF14632 Acidic N-terminal SPT6
Gene3D G3DSA:2.40.50.140 -
CDD cd09918 SH2_Nterm_SPT6_like
CDD cd00164 S1_like
Gene3D G3DSA:1.10.10.650 -
SUPERFAMILY SSF50249 Nucleic acid-binding proteins
Gene3D G3DSA:1.10.3500.10 -
Gene3D G3DSA:3.30.505.10 SHC Adaptor Protein
Coils Coil Coil
SUPERFAMILY SSF53098 Ribonuclease H-like
Pfam PF17674 HHH domain
Pfam PF14641 Helix-turn-helix DNA-binding domain of SPT6
CDD cd09928 SH2_Cterm_SPT6_like
MapolyID Mapoly0025s0106 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHC1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g25720.1 chr2:28131163..28143066 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.