Mp3g00050



Description

Annotation

Database ID Description
CDD cd00200 WD40
CDD cd22948 Coatomer_WDAD_alpha
FunFam G3DSA:1.25.40.470:FF:000002 Coatomer subunit alpha
FunFam G3DSA:2.130.10.10:FF:000010 Coatomer subunit alpha
Gene3D G3DSA:1.25.40.470 -
Gene3D G3DSA:2.130.10.10 -
KEGG K05236 coatomer subunit alpha
KOG KOG0292 Vesicle coat complex COPI, alpha subunit; [U]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR19876 COATOMER
PIRSF PIRSF003354 Alpha-COP
PRINTS PR00320 G protein beta WD-40 repeat signature
Pfam PF00400 WD domain, G-beta repeat
Pfam PF04053 Coatomer WD associated region
Pfam PF06957 Coatomer (COPI) alpha subunit C-terminus
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
SMART SM00320 WD40_4
SUPERFAMILY SSF50978 WD40 repeat-like
SUPERFAMILY SSF51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
GO GO:0016192 vesicle-mediated transport
GO GO:0006891 intra-Golgi vesicle-mediated transport
GO GO:0005198 structural molecule activity
GO GO:0005515 protein binding
GO GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO GO:0006886 intracellular protein transport
GO GO:0030117 membrane coat
GO GO:0030126 COPI vesicle coat
MapolyID Mapoly0007s0005 -

Nomenclature

Gene symbol Product Transcript ID Status
MpRET1 Coatomer alpha subunit (COPI) Published
Locus assigned by MarpolBase literature-mining curation (2026-10): Supplementary table of PMC9420845; the locus is annotated as the coatomer alpha subunit (COPI).

Associated Literature (AI-based literature mining)

Coatomer alpha subunit (COPI); Alpha COPI subunit; tested by beta-estradiol-inducible knockdown with significantly reduced mRNA. Knockdown caused abnormally shaped oil bodies and severe developmental inhibition, consistent with COPI dysfunction in oil body formation. (from nomenclature)

1 core 0 peripheral

Kanazawa, T., et al. (2022) · Frontiers in Plant Science  research experimental subject
Alpha COPI subunit; tested by beta-estradiol-inducible knockdown with significantly reduced mRNA. Knockdown caused abnormally shaped oil bodies and severe developmental inhibition, consistent with COPI dysfunction in oil body formation.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g00050.1 chr3:161661..167278 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g00050 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g00050 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.