Mp3g07610



Description

Annotation

Database ID Description
SMART SM00558 cupin_9
SMART SM00355 c2h2final6
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:3.30.160.60:FF:000747 Probable lysine-specific demethylase ELF6
PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE
ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile.
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
FunFam G3DSA:3.30.160.60:FF:000446 Zinc finger protein
SMART SM00545 JmjN_1
ProSiteProfiles PS51183 JmjN domain profile.
SUPERFAMILY SSF51197 Clavaminate synthase-like
ProSiteProfiles PS51184 JmjC domain profile.
SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers
Gene3D G3DSA:2.60.120.650 Cupin
Pfam PF02375 jmjN domain
Gene3D G3DSA:3.30.160.60 Classic Zinc Finger
Pfam PF02373 JmjC domain, hydroxylase
KOG KOG1246 DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; C-term missing; [R]
KOG KOG2462 C2H2-type Zn-finger protein; N-term missing; [K]
MapolyID Mapoly0006s0237 -
GO GO:0005634 nucleus
GO GO:0010468 regulation of gene expression
GO GO:0006338 chromatin remodeling
GO GO:0000785 chromatin
GO GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity
GO GO:0032452 histone demethylase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpREF6 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g07610.1 chr3:7847467..7865815 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.