| Database | ID | Description |
|---|---|---|
| Pfam | PF00628 | PHD-finger |
| CDD | cd15556 | PHD_MMD1_like |
| SMART | SM00249 | PHD_3 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. |
| PANTHER | PTHR46201 | PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED |
| KEGG | K26271 | PHD finger protein MS1/MMD1 |
| KOG | KOG1844 | PHD Zn-finger proteins; [R] |
| MapolyID | Mapoly0039s0094 | - |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpGLID | PHD-finger transcription factor, ortholog of Arabidopsis thaliana MS1 | Published |
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g17000.1 ATGTGCGGCT CGTGTCGTGT TGGTCCACAG CTCTATGCTC GCTGAAGAAG GGCTGCAGTA GACGACGAGG GTAGCGGGAG AGAGAGCGAG AGTAAGTGTG TGGGAAGAGG TATTTTCGTG GCCGAAATTG TGGGAGGAGG TGTCAGGAAG AGAGCTTGAG GGCTAATTGT CGAGACTAGA GCGTACCGAC GGAGGGAGAG ACAGGGAGGG TGTGCGAGGG TCTTGCGGAG CGCACTGTTC TGTCTAGCGG CTCGGGCCCC AGCTTTCGGT GCAGTTTCGG GAATTTTTGC TGGGCAGGGA GCTGGAATCA ATCACATCAG AGAGCTGCGC GTCGATAGCA TTTGGGTTGT CGAGTGAAGT GGTGTTTGCA AGCAATTAAT TAATTGCCTT CGGCAGTCCC TTCTGTCTCT TGTGTTATCT GATTGGTGCT TCCCTAAGTT TCCTGGGTCT TCAAAATCCG AGGCTGTTTA AGTTCAAACG CAAATAAACT CAGACAAACA AACACAAGAA CGAGAAGCAT TTGTTCGAGG TTCAGAGATA TCTCTCAAAA TGTTCCCCTC GGCCGATCGC TCGCGCAAGC GCAGGTCTCG TGACAGGATG TTCGGGATCA CCACCTTCGG AGATCCTGGG TGTCCGGGCG ATTTCGATGG CCCGTTCCGA GAGAACATAA AAGTTTTTTT GGACGAGTGT GCAGAGCCAG AGCTTTACCA CATTGAAGGC ATGCCGGCGT GGACCATCAC CCTACAAGAG TCTGATAACC ACGGCGACCG TTGCACTTTG CTCATTGTTG AGGAGGCTTC CATGCATGCT CTGCATCCCC ACTGCGACCA CTGCCGGTGC ATTGGTGAGA GACTCTTCCC AAAACGAGTC ATGCATGCAC GTGGTGTATT TTTATCTCTT CGCCAAATTG TGCTCAAGTC CTTCGACGGA TCGACCAAAG GACGTGCATC CATTCGATGG ATACTTCTGT TCAAGCTTAC GCTTTACTGA GCACCTCAGT TCAGACTATC TCATTCCCTG TCTGAATTGT TGCAGGTTGG AGTCATCATC CCGTCTCTAA CAAACGCTGG CATTTCATCA TTCCCGCCCC TGAATTCGAG GACCGCCCTG TCCCGACATG GACTGGAGCT GGACTGGGAG GCAAAGTATG CCCACAGTGC AGTGATCCCG TTCCTCCTAC GCTGTTCAGC TGCCCGTCTT GTGGAGAAGA GGCGGTGGTC GGGAGCATCC TGGATCTGCA AAGCCACCTC CTCCACGGGG TGCTTCACTC GAACGGGTTC GGACACTTGC TGCGGATAAA TGGAAGAGAA AAAGGATCCA AGCTCGCATC CGGAAGGGAA ATCATGGATC TGTGGGATCG AATTTGTGCC ATGCTGAGAG CCAGGTATAT TTTTTATCCG CCTTAATATA TTGCGAATGC ATCATACCCT TGATGAACTG ATAAAACATT GATCCCAGCA TTTTACGTCG TCTAAGTCTA GCAAAGTCGC ACCTGCACAA CGTGGTCACG TGAGATACGT GCTGGCATGA AAATAACGAA AGGTTTGACA TTGGGTCTTC GAGCAGACCT TACATAGTAC GACTCTTAGA AATTCAAGTC AAACGAGGGA TATTGTGTCA GAAGTGGTTC TGGTTGTCGG GCTGCACGGA GCTGAGCTGA AAATGACTGA TTTACCACCG GCTTTGAGCA TACGCCCGAT TGTCGCCGCA GTTTAAAGGA CCTTGTGGGG AATCATCTGC TATTTGATAC GCTAAAATAT ACCATTTTTA CCTTAATGCA TGGAAGAAAA CAACTTGTCC TGATTCGCCG GCTGCTTCAT TTTGGAATTT TGCAGGAAGG TGAGTGTTGA AGATGTGGCT AAGAAGCGAA CTCTCGAGTT CCGACTCCTC CATGCAGTTG CCTACGGAGA ATGCTGGTAC GGGAGGTGGG GATATAAGTT CGGACATGGA AGTTTTGGAA TAAGCCAACA GATGTACGTC AAAGCAATTG AGGCGATCCG AGGCATGCCA CTGAACGTGA TGGCTCCACA CTTCGAAGGT GTCGATCAGG ATGTACTTGC AATTGTGGGG ATGTATCAGC GTATCAGTTG TCAGAACCTC CAAACGGTGG GCGATTTGAT CCGCTTTATG ATGGAGCTGA AGGCAAGACT TCCTCTCCAT CCGACTTCAA AGACTTTTTC GAAAAGTTCG AAGGACTTTG AGAAGAAAAA TACTTGCGGC AATATCAGCA ACAACCCTGC TGTCGACATG CCCTGCCGAT GGTCTGTCAA ACGCTTGGAC CTTGCAACTC AAGTTATTGT GGAATCTCTC AAGGGGTGTG AGAAGAAGTG GATGCCGAGA CAGGACGTGC GCGATGCAGC ACGAGTTTAC ATTGGTGACA CAGGTCTCCT AGACTTTGTC CTCAAGTCCT TGGGCAACCG AGTTGTTGGG GGCCACGTTG TGCGGAGAGC TGTGAATCCT ATCACGAAAG TTCTGGAGTA CAGCTTAGAG GATGTCAACG GCTCGGCTGC GAACTCGAAT CCCAGGGAGA GAGGGCAACC GGAACCAGTC TGCGAGGTTG GTCGCGCTGA AGTTCTGCGG GATATCGTCT ACATTTACAA GCATGTTCTG GAGAGCTACA AGCCTGCAAA GAGAGGCATC AAGAGTGTCC TTACTGCCAT TCCTACGGCA TCTCGGATCA TTCTTGACAC CAAGCAATTC ATCAAGGACT ACCGAGGCGA GATAACTCGG AAATGTGCCA ACAATGAGTG GGACATGGAT GACGATGAGA ATTTGCGAGT CATGTGTACT GTTGTCTTGA AGGATGACGT CCCATTGAGG AACCGACCGA GTCCGCCGGC GGAGCTTGTC GTGTTACCCC CACATGCGAC AATTGGTGAT TTGAAGGCCG AGGCGCAGCG GGCTTTCCGC GAGACATATC ACATAATGAA GAACTTTGTA GTGGAGTCTA TTCCTCATCT GGACGGGGAC GATGAAGATC TTCTGTTTGG AACTATTGAA TCAGGATCCA CCGTTATCGT CGATGGAAGT GGCATCGATA TGCGAAGTGA CTGGCGCTAT GAAGGAGGGA ACGATTCCTG GATTGTGGAT TGCCCATGTG GAACTAAAGA CGACGATGGG GAAAGAATGA TCGCGTGTGA TTTTTGTGAA GTTTGGCAGC ATACTCGCTG CGGGGGTATT TCGGACTTCG ATGCTGTACC TCTACGATTT CTGTGCCATC GGTGCGGCGT CAATCTCTTC CATGCCATGC TCTGAAGATA TCGCGTCTTA ATCTTCGAAA ACACAGCATG TACTTGACAG TCGGGTTCTG AGATTGGCTG TATCATAGTG CTCATCATTG GCTCCCGTGT AGAGCATATT CAGTTCTGAA TTGGTTCTTC TATTACTTGT GTTACAAATT GCTGTCTATC CTCAAGCGTG AAATGCAGTT GTGCAAGATC GAGGTGCACA AGGTCGCATT CTAGGTGGTA ATCTTCTCAG GGCCTTTGCT GGTTGCAGGC ATGCTAACAT TTTTACTAGT GGGAGGTGCT CTTCAACAAG CTTTCCTTCT GTACAGTACA CGTACGGGAG CAACCCATTC ATAGTTTTCT AGAGTTGGAT CAGGCAGCAC TGCGCTCGAG TTTGAAGCAT CACGCTGATG ATGAGATCAC AAACTGTTTA GTATTGTAGC TTTCTGTGCC CAAGGGCCTT CTCTTGTTCA TCTTTGTGTT TTGTTATTGA TCCGATATTT CAATGCTTGC TGAAAGTATA GATTGGATAA CTACAGTAGA TTGGATTACA ACAGTAACCG TAAATTATCA TCGATATAGT CTGGTACTTC AGAAAGCATC AGAGACTCCA TTCCTTGCTA GTTGAGATTT CTACATTCGA TCCATTCCGA TCTCCTGAAC GGCACTAGAT AGGTCCCAAG CATCACATTG AACTATCATG GCTGGTGATA TAGGTGTATA CTTACAATGA ATAACATGTT CCATTCTTGT ATATAAAATT TGTTACCCTT CACCAATGAA CGCAGCTCCA CCGAGTGCCT TATTC |
mRNA UTR + CDS |
| >Mp3g17000.1 ATGTGCGGCT CGTGTCGTGT TGGTCCACAG CTCTATGCTC GCTGAAGAAG GGCTGCAGTA GACGACGAGG GTAGCGGGAG AGAGAGCGAG AGTAAGTGTG TGGGAAGAGG TATTTTCGTG GCCGAAATTG TGGGAGGAGG TGTCAGGAAG AGAGCTTGAG GGCTAATTGT CGAGACTAGA GCGTACCGAC GGAGGGAGAG ACAGGGAGGG TGTGCGAGGG TCTTGCGGAG CGCACTGTTC TGTCTAGCGG CTCGGGCCCC AGCTTTCGGT GCAGTTTCGG GAATTTTTGC TGGGCAGGGA GCTGGAATCA ATCACATCAG AGAGCTGCGC GTCGATAGCA TTTGGGTTGT CGAGTGAAGT GGTGTTTGCA AGCAATTAAT TAATTGCCTT CGGCAGTCCC TTCTGTCTCT TGTGTTATCT GATTGGTGCT TCCCTAAGTT TCCTGGGTCT TCAAAATCCG AGGCTGTTTA AGTTCAAACG CAAATAAACT CAGACAAACA AACACAAGAA CGAGAAGCAT TTGTTCGAGG TTCAGAGATA TCTCTCAAAA TGTTCCCCTC GGCCGATCGC TCGCGCAAGC GCAGGTCTCG TGACAGGATG TTCGGGATCA CCACCTTCGG AGATCCTGGG TGTCCGGGCG ATTTCGATGG CCCGTTCCGA GAGAACATAA AAGTTTTTTT GGACGAGTGT GCAGAGCCAG AGCTTTACCA CATTGAAGGC ATGCCGGCGT GGACCATCAC CCTACAAGAG TCTGATAACC ACGGCGACCG TTGCACTTTG CTCATTGTTG AGGAGGCTTC CATGCATGCT CTGCATCCCC ACTGCGACCA CTGCCGGTGC ATTGGTTGGA GTCATCATCC CGTCTCTAAC AAACGCTGGC ATTTCATCAT TCCCGCCCCT GAATTCGAGG ACCGCCCTGT CCCGACATGG ACTGGAGCTG GACTGGGAGG CAAAGTATGC CCACAGTGCA GTGATCCCGT TCCTCCTACG CTGTTCAGCT GCCCGTCTTG TGGAGAAGAG GCGGTGGTCG GGAGCATCCT GGATCTGCAA AGCCACCTCC TCCACGGGGT GCTTCACTCG AACGGGTTCG GACACTTGCT GCGGATAAAT GGAAGAGAAA AAGGATCCAA GCTCGCATCC GGAAGGGAAA TCATGGATCT GTGGGATCGA ATTTGTGCCA TGCTGAGAGC CAGGAAGGTG AGTGTTGAAG ATGTGGCTAA GAAGCGAACT CTCGAGTTCC GACTCCTCCA TGCAGTTGCC TACGGAGAAT GCTGGTACGG GAGGTGGGGA TATAAGTTCG GACATGGAAG TTTTGGAATA AGCCAACAGA TGTACGTCAA AGCAATTGAG GCGATCCGAG GCATGCCACT GAACGTGATG GCTCCACACT TCGAAGGTGT CGATCAGGAT GTACTTGCAA TTGTGGGGAT GTATCAGCGT ATCAGTTGTC AGAACCTCCA AACGGTGGGC GATTTGATCC GCTTTATGAT GGAGCTGAAG GCAAGACTTC CTCTCCATCC GACTTCAAAG ACTTTTTCGA AAAGTTCGAA GGACTTTGAG AAGAAAAATA CTTGCGGCAA TATCAGCAAC AACCCTGCTG TCGACATGCC CTGCCGATGG TCTGTCAAAC GCTTGGACCT TGCAACTCAA GTTATTGTGG AATCTCTCAA GGGGTGTGAG AAGAAGTGGA TGCCGAGACA GGACGTGCGC GATGCAGCAC GAGTTTACAT TGGTGACACA GGTCTCCTAG ACTTTGTCCT CAAGTCCTTG GGCAACCGAG TTGTTGGGGG CCACGTTGTG CGGAGAGCTG TGAATCCTAT CACGAAAGTT CTGGAGTACA GCTTAGAGGA TGTCAACGGC TCGGCTGCGA ACTCGAATCC CAGGGAGAGA GGGCAACCGG AACCAGTCTG CGAGGTTGGT CGCGCTGAAG TTCTGCGGGA TATCGTCTAC ATTTACAAGC ATGTTCTGGA GAGCTACAAG CCTGCAAAGA GAGGCATCAA GAGTGTCCTT ACTGCCATTC CTACGGCATC TCGGATCATT CTTGACACCA AGCAATTCAT CAAGGACTAC CGAGGCGAGA TAACTCGGAA ATGTGCCAAC AATGAGTGGG ACATGGATGA CGATGAGAAT TTGCGAGTCA TGTGTACTGT TGTCTTGAAG GATGACGTCC CATTGAGGAA CCGACCGAGT CCGCCGGCGG AGCTTGTCGT GTTACCCCCA CATGCGACAA TTGGTGATTT GAAGGCCGAG GCGCAGCGGG CTTTCCGCGA GACATATCAC ATAATGAAGA ACTTTGTAGT GGAGTCTATT CCTCATCTGG ACGGGGACGA TGAAGATCTT CTGTTTGGAA CTATTGAATC AGGATCCACC GTTATCGTCG ATGGAAGTGG CATCGATATG CGAAGTGACT GGCGCTATGA AGGAGGGAAC GATTCCTGGA TTGTGGATTG CCCATGTGGA ACTAAAGACG ACGATGGGGA AAGAATGATC GCGTGTGATT TTTGTGAAGT TTGGCAGCAT ACTCGCTGCG GGGGTATTTC GGACTTCGAT GCTGTACCTC TACGATTTCT GTGCCATCGG TGCGGCGTCA ATCTCTTCCA TGCCATGCTC TGAAGATATC GCGTCTTAAT CTTCGAAAAC ACAGCATGTA CTTGACAGTC GGGTTCTGAG ATTGGCTGTA TCATAGTGCT CATCATTGGC TCCCGTGTAG AGCATATTCA GTTCTGAATT GGTTCTTCTA TTACTTGTGT TACAAATTGC TGTCTATCCT CAAGCGTGAA ATGCAGTTGT GCAAGATCGA GGTGCACAAG GTCGCATTCT AGGTGGTAAT CTTCTCAGGG CCTTTGCTGG TTGCAGGCAT GCTAACATTT TTACTAGTGG GAGGTGCTCT TCAACAAGCT TTCCTTCTGT ACAGTACACG TACGGGAGCA ACCCATTCAT AGTTTTCTAG AGTTGGATCA GGCAGCACTG CGCTCGAGTT TGAAGCATCA CGCTGATGAT GAGATCACAA ACTGTTTAGT ATTGTAGCTT TCTGTGCCCA AGGGCCTTCT CTTGTTCATC TTTGTGTTTT GTTATTGATC CGATATTTCA ATGCTTGCTG AAAGTATAGA TTGGATAACT ACAGTAGATT GGATTACAAC AGTAACCGTA AATTATCATC GATATAGTCT GGTACTTCAG AAAGCATCAG AGACTCCATT CCTTGCTAGT TGAGATTTCT ACATTCGATC CATTCCGATC TCCTGAACGG CACTAGATAG GTCCCAAGCA TCACATTGAA CTATCATGGC TGGTGATATA GGTGTATACT TACAATGAAT AACATGTTCC ATTCTTGTAT ATAAAATTTG TTACCCTTCA CCAATGAACG CAGCTCCACC GAGTGCCTTA TTC |
CDS |
| >Mp3g17000.1 ATGTTCCCCT CGGCCGATCG CTCGCGCAAG CGCAGGTCTC GTGACAGGAT GTTCGGGATC ACCACCTTCG GAGATCCTGG GTGTCCGGGC GATTTCGATG GCCCGTTCCG AGAGAACATA AAAGTTTTTT TGGACGAGTG TGCAGAGCCA GAGCTTTACC ACATTGAAGG CATGCCGGCG TGGACCATCA CCCTACAAGA GTCTGATAAC CACGGCGACC GTTGCACTTT GCTCATTGTT GAGGAGGCTT CCATGCATGC TCTGCATCCC CACTGCGACC ACTGCCGGTG CATTGGTTGG AGTCATCATC CCGTCTCTAA CAAACGCTGG CATTTCATCA TTCCCGCCCC TGAATTCGAG GACCGCCCTG TCCCGACATG GACTGGAGCT GGACTGGGAG GCAAAGTATG CCCACAGTGC AGTGATCCCG TTCCTCCTAC GCTGTTCAGC TGCCCGTCTT GTGGAGAAGA GGCGGTGGTC GGGAGCATCC TGGATCTGCA AAGCCACCTC CTCCACGGGG TGCTTCACTC GAACGGGTTC GGACACTTGC TGCGGATAAA TGGAAGAGAA AAAGGATCCA AGCTCGCATC CGGAAGGGAA ATCATGGATC TGTGGGATCG AATTTGTGCC ATGCTGAGAG CCAGGAAGGT GAGTGTTGAA GATGTGGCTA AGAAGCGAAC TCTCGAGTTC CGACTCCTCC ATGCAGTTGC CTACGGAGAA TGCTGGTACG GGAGGTGGGG ATATAAGTTC GGACATGGAA GTTTTGGAAT AAGCCAACAG ATGTACGTCA AAGCAATTGA GGCGATCCGA GGCATGCCAC TGAACGTGAT GGCTCCACAC TTCGAAGGTG TCGATCAGGA TGTACTTGCA ATTGTGGGGA TGTATCAGCG TATCAGTTGT CAGAACCTCC AAACGGTGGG CGATTTGATC CGCTTTATGA TGGAGCTGAA GGCAAGACTT CCTCTCCATC CGACTTCAAA GACTTTTTCG AAAAGTTCGA AGGACTTTGA GAAGAAAAAT ACTTGCGGCA ATATCAGCAA CAACCCTGCT GTCGACATGC CCTGCCGATG GTCTGTCAAA CGCTTGGACC TTGCAACTCA AGTTATTGTG GAATCTCTCA AGGGGTGTGA GAAGAAGTGG ATGCCGAGAC AGGACGTGCG CGATGCAGCA CGAGTTTACA TTGGTGACAC AGGTCTCCTA GACTTTGTCC TCAAGTCCTT GGGCAACCGA GTTGTTGGGG GCCACGTTGT GCGGAGAGCT GTGAATCCTA TCACGAAAGT TCTGGAGTAC AGCTTAGAGG ATGTCAACGG CTCGGCTGCG AACTCGAATC CCAGGGAGAG AGGGCAACCG GAACCAGTCT GCGAGGTTGG TCGCGCTGAA GTTCTGCGGG ATATCGTCTA CATTTACAAG CATGTTCTGG AGAGCTACAA GCCTGCAAAG AGAGGCATCA AGAGTGTCCT TACTGCCATT CCTACGGCAT CTCGGATCAT TCTTGACACC AAGCAATTCA TCAAGGACTA CCGAGGCGAG ATAACTCGGA AATGTGCCAA CAATGAGTGG GACATGGATG ACGATGAGAA TTTGCGAGTC ATGTGTACTG TTGTCTTGAA GGATGACGTC CCATTGAGGA ACCGACCGAG TCCGCCGGCG GAGCTTGTCG TGTTACCCCC ACATGCGACA ATTGGTGATT TGAAGGCCGA GGCGCAGCGG GCTTTCCGCG AGACATATCA CATAATGAAG AACTTTGTAG TGGAGTCTAT TCCTCATCTG GACGGGGACG ATGAAGATCT TCTGTTTGGA ACTATTGAAT CAGGATCCAC CGTTATCGTC GATGGAAGTG GCATCGATAT GCGAAGTGAC TGGCGCTATG AAGGAGGGAA CGATTCCTGG ATTGTGGATT GCCCATGTGG AACTAAAGAC GACGATGGGG AAAGAATGAT CGCGTGTGAT TTTTGTGAAG TTTGGCAGCA TACTCGCTGC GGGGGTATTT CGGACTTCGA TGCTGTACCT CTACGATTTC TGTGCCATCG GTGCGGCGTC AATCTCTTCC ATGCCATGCT CTGA |
Protein |
| >Mp3g17000.1 MFPSADRSRK RRSRDRMFGI TTFGDPGCPG DFDGPFRENI KVFLDECAEP ELYHIEGMPA WTITLQESDN HGDRCTLLIV EEASMHALHP HCDHCRCIGW SHHPVSNKRW HFIIPAPEFE DRPVPTWTGA GLGGKVCPQC SDPVPPTLFS CPSCGEEAVV GSILDLQSHL LHGVLHSNGF GHLLRINGRE KGSKLASGRE IMDLWDRICA MLRARKVSVE DVAKKRTLEF RLLHAVAYGE CWYGRWGYKF GHGSFGISQQ MYVKAIEAIR GMPLNVMAPH FEGVDQDVLA IVGMYQRISC QNLQTVGDLI RFMMELKARL PLHPTSKTFS KSSKDFEKKN TCGNISNNPA VDMPCRWSVK RLDLATQVIV ESLKGCEKKW MPRQDVRDAA RVYIGDTGLL DFVLKSLGNR VVGGHVVRRA VNPITKVLEY SLEDVNGSAA NSNPRERGQP EPVCEVGRAE VLRDIVYIYK HVLESYKPAK RGIKSVLTAI PTASRIILDT KQFIKDYRGE ITRKCANNEW DMDDDENLRV MCTVVLKDDV PLRNRPSPPA ELVVLPPHAT IGDLKAEAQR AFRETYHIMK NFVVESIPHL DGDDEDLLFG TIESGSTVIV DGSGIDMRSD WRYEGGNDSW IVDCPCGTKD DDGERMIACD FCEVWQHTRC GGISDFDAVP LRFLCHRCGV NLFHAML |