Mp3g25460



Description

Annotation

Database ID Description
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
ProSiteProfiles PS50011 Protein kinase domain profile.
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1
PANTHER PTHR44218 PROTEIN SPA1-RELATED 2
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.130.10.10 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
SMART SM00320 WD40_4
SUPERFAMILY SSF50978 WD40 repeat-like
Pfam PF00400 WD domain, G-beta repeat
FunFam G3DSA:2.130.10.10:FF:000090 E3 ubiquitin-protein ligase RFWD2 isoform X1
PRINTS PR00320 G protein beta WD-40 repeat signature
SUPERFAMILY SSF56112 Protein kinase-like (PK-like)
Coils Coil Coil
KEGG K26557 protein SPA1-related 3/4
KOG KOG0264 Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1; N-term missing; [B]
KOG KOG1033 eIF-2alpha kinase PEK/EIF2AK3; N-term missing; [J]
KOG KOG0293 WD40 repeat-containing protein; N-term missing; [S]
MapolyID Mapoly0100s0059 -
GO GO:0005524 ATP binding
GO GO:0005515 protein binding
GO GO:0009640 photomorphogenesis
GO GO:0004672 protein kinase activity
GO GO:0006468 protein phosphorylation

Nomenclature

Gene symbol Product Transcript ID Status
MpSPA1 A signaling protein of multiple light signaling Published

Associated Literature (AI-based literature mining, Beta-version)

COP1-interacting regulator with kinase-like, coiled-coil, and WD40 domains; knockout lines Mpspa-8 and Mpspa-11 were generated. MpSPA accumulates under blue light and promotes MpCOP1-mediated ubiquitination of MpHY5.

1 core 0 peripheral

Zhang, L., et al. (2022b) · International Journal of Molecular Sciences  research experimental subject
COP1-interacting regulator with kinase-like, coiled-coil, and WD40 domains; knockout lines Mpspa-8 and Mpspa-11 were generated. MpSPA accumulates under blue light and promotes MpCOP1-mediated ubiquitination of MpHY5.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g25460.1 chr3:28949514..28955715 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g25460.2 chr3:28949514..28955694 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g25460.3 chr3:28949514..28955694 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g25460 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g25460 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.