Mp4g00040



Description

Annotation

Database ID Description
CDD cd05162 PWWP
CDD cd11660 SANT_TRF
CDD cd15532 PHD2_CHD_II
CDD cd18659 CD2_tandem
CDD cd18660 CD1_tandem
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:1.10.10.60 -
Gene3D G3DSA:2.30.30.140 -
Gene3D G3DSA:2.40.50.40 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
Gene3D G3DSA:3.40.50.10810 -
Gene3D G3DSA:3.40.50.300 -
KOG KOG0384 Chromodomain-helicase DNA-binding protein; C-term missing; [K]
KOG KOG1904 Transcription coactivator; C-term missing; [K]
KOG KOG4299 PHD Zn-finger protein; C-term missing; [R]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Pfam PF00176 SNF2-related domain
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Pfam PF00628 PHD-finger
Pfam PF00855 PWWP domain
Pfam PF06465 CHD subfamily II, DUF1087
ProSitePatterns PS01359 Zinc finger PHD-type signature.
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
ProSiteProfiles PS50090 Myb-like domain profile.
ProSiteProfiles PS50812 PWWP domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00184 ring_2
SMART SM00249 PHD_3
SMART SM00298 chromo_7
SMART SM00487 ultradead3
SMART SM00490 helicmild6
SMART SM01147 DUF1087_2
SUPERFAMILY SSF46689 Homeodomain-like
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF54160 Chromo domain-like
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
SUPERFAMILY SSF63748 Tudor/PWWP/MBT
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding
MapolyID Mapoly0162s0017 -

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB20 transcription factor, MYB Published

Associated Literature (AI-based literature mining)

PICKLE-LIKE 2, a Marchantia PKL homolog. A CRISPR pll2 mutant was generated and showed growth defects and DEGs overlapping pll1/pll3. APA of Hi-C data showed TCP1-distal-targeted histone-modified regions were spatially aggregated in WT but dispersed in the pll2 mutant. MpPLL2 also interacts with MpTCP1, MpHY5 and MpPIF by Y2H.

1 core 0 peripheral

Song M, Wang Y, Ma T, Terzaghi W, He K, Wang H, Xu B, Jing Y, Lin R, Deng XW, Zhu D, Wang Y. (2025) · Nucleic acids research  research experimental subject
PICKLE-LIKE 2, a Marchantia PKL homolog. A CRISPR pll2 mutant was generated and showed growth defects and DEGs overlapping pll1/pll3. APA of Hi-C data showed TCP1-distal-targeted histone-modified regions were spatially aggregated in WT but dispersed in the pll2 mutant. MpPLL2 also interacts with MpTCP1, MpHY5 and MpPIF by Y2H.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g00040.1 chr4:85663..106188 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g00040 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g00040 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.