Mp4g03900



Description

Annotation

Database ID Description
PANTHER PTHR12131 ATP-DEPENDENT RNA AND DNA HELICASE
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.40.30.300 -
Coils Coil Coil
PIRSF PIRSF005198 SKI2
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
FunFam G3DSA:3.40.50.300:FF:000083 ATP-dependent RNA helicase DOB1
CDD cd18795 SF2_C_Ski2
Pfam PF21408 Exosome RNA helicase MTR4-like, stalk
Pfam PF08148 DSHCT (NUC185) domain
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00270 DEAD/DEAH box helicase
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SMART SM00487 ultradead3
FunFam G3DSA:1.10.3380.30:FF:000006 DExH-box ATP-dependent RNA helicase DExH10
CDD cd13154 KOW_Mtr4
Gene3D G3DSA:1.10.3380.30 -
CDD cd18024 DEXHc_Mtr4-like
SMART SM01142 DSHCT_2
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF13234 Mtr4-like, beta-barrel domain
SMART SM00490 helicmild6
FunFam G3DSA:3.40.50.300:FF:000141 ATP-dependent RNA helicase DOB1
FunFam G3DSA:2.40.30.300:FF:000001 Mtr4 exosome RNA helicase
KEGG K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
KOG KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily; [A]
MapolyID Mapoly0044s0084 -
GO GO:0005634 nucleus
GO GO:0006401 RNA catabolic process
GO GO:0003723 RNA binding
GO GO:0005524 ATP binding
GO GO:0003724 RNA helicase activity
GO GO:0000460 maturation of 5.8S rRNA
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHEN2 DExH-box RNA helicase Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g03900.1 chr4:5251305..5266657 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g03900.2 chr4:5251305..5266657 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.